miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6213 5' -58.1 NC_001844.1 + 15936 0.66 0.856434
Target:  5'- cGGGUGGUgaauagcgcgCACCCaUGACUGguaaGCGCUg -3'
miRNA:   3'- -CCCAUCGa---------GUGGG-GUUGGCag--CGCGG- -5'
6213 5' -58.1 NC_001844.1 + 44042 0.66 0.84876
Target:  5'- uGGUAGa----CCCAACCGcCGUGCUu -3'
miRNA:   3'- cCCAUCgagugGGGUUGGCaGCGCGG- -5'
6213 5' -58.1 NC_001844.1 + 117291 0.66 0.844065
Target:  5'- gGGGUggacgacgcgcccuuGGC-CACCCCGGCgGUagucauccCGcCGCCu -3'
miRNA:   3'- -CCCA---------------UCGaGUGGGGUUGgCA--------GC-GCGG- -5'
6213 5' -58.1 NC_001844.1 + 136056 0.67 0.80771
Target:  5'- cGG-AGCUauuuCCCCGACaCGcCGcCGCCg -3'
miRNA:   3'- cCCaUCGAgu--GGGGUUG-GCaGC-GCGG- -5'
6213 5' -58.1 NC_001844.1 + 122040 0.67 0.789282
Target:  5'- gGGGaaaUAGCUCcggaucgGCCCCcGCCauGUCcagcaGCGCCa -3'
miRNA:   3'- -CCC---AUCGAG-------UGGGGuUGG--CAG-----CGCGG- -5'
6213 5' -58.1 NC_001844.1 + 38068 0.67 0.772093
Target:  5'- -cGUGGCUCGCgCCUcuCUGgugCGCGCUu -3'
miRNA:   3'- ccCAUCGAGUG-GGGuuGGCa--GCGCGG- -5'
6213 5' -58.1 NC_001844.1 + 105613 0.67 0.772093
Target:  5'- ----cGCUCGUCUCAACgGUCGCGCg -3'
miRNA:   3'- cccauCGAGUGGGGUUGgCAGCGCGg -5'
6213 5' -58.1 NC_001844.1 + 113741 0.68 0.753536
Target:  5'- cGGUGGa-CACCCgGGCCGgagaGCGCa -3'
miRNA:   3'- cCCAUCgaGUGGGgUUGGCag--CGCGg -5'
6213 5' -58.1 NC_001844.1 + 40666 0.68 0.752596
Target:  5'- uGGGUugccucuguugagGGCUCGCuUCUAGCCGcCGCaGCUu -3'
miRNA:   3'- -CCCA-------------UCGAGUG-GGGUUGGCaGCG-CGG- -5'
6213 5' -58.1 NC_001844.1 + 11954 0.68 0.734569
Target:  5'- ---aGGCUgCAUgCCAAaaGUCGCGCCu -3'
miRNA:   3'- cccaUCGA-GUGgGGUUggCAGCGCGG- -5'
6213 5' -58.1 NC_001844.1 + 143350 0.69 0.675903
Target:  5'- cGGG-AGCUC-CCCCGccGCCGgcUCcaggggcucggaGCGCCg -3'
miRNA:   3'- -CCCaUCGAGuGGGGU--UGGC--AG------------CGCGG- -5'
6213 5' -58.1 NC_001844.1 + 117637 0.7 0.635994
Target:  5'- uGGGgcggAGCUacCACCCCAGCUGggaGagGCCa -3'
miRNA:   3'- -CCCa---UCGA--GUGGGGUUGGCag-Cg-CGG- -5'
6213 5' -58.1 NC_001844.1 + 113886 0.7 0.615991
Target:  5'- cGGG-AGCgcCACCUCAGCCG-CGCGguCCu -3'
miRNA:   3'- -CCCaUCGa-GUGGGGUUGGCaGCGC--GG- -5'
6213 5' -58.1 NC_001844.1 + 116239 0.7 0.605006
Target:  5'- cGGGacgGGCUCugggaugACCCCGaaauaguucugGCCGccUCGCGCUa -3'
miRNA:   3'- -CCCa--UCGAG-------UGGGGU-----------UGGC--AGCGCGG- -5'
6213 5' -58.1 NC_001844.1 + 116294 0.71 0.566306
Target:  5'- cGGGUcGgaCGCCCCAccACCGgggagggUGCGCUa -3'
miRNA:   3'- -CCCAuCgaGUGGGGU--UGGCa------GCGCGG- -5'
6213 5' -58.1 NC_001844.1 + 142983 0.71 0.566306
Target:  5'- aGGGacuGCUgCugCCCAA-CGUCGcCGCCg -3'
miRNA:   3'- -CCCau-CGA-GugGGGUUgGCAGC-GCGG- -5'
6213 5' -58.1 NC_001844.1 + 144595 0.72 0.527308
Target:  5'- cGGcgGGCUCcacgGCCCCGGCUc-CGCGCCg -3'
miRNA:   3'- cCCa-UCGAG----UGGGGUUGGcaGCGCGG- -5'
6213 5' -58.1 NC_001844.1 + 114275 0.72 0.498729
Target:  5'- uGGGUGGaCUCccaaccaCCCGACCcggcggcUCGCGCCg -3'
miRNA:   3'- -CCCAUC-GAGug-----GGGUUGGc------AGCGCGG- -5'
6213 5' -58.1 NC_001844.1 + 137744 0.73 0.461748
Target:  5'- cGGG-AGCguucugCGCUCC-GCCGUgGCGCCc -3'
miRNA:   3'- -CCCaUCGa-----GUGGGGuUGGCAgCGCGG- -5'
6213 5' -58.1 NC_001844.1 + 142334 0.74 0.39245
Target:  5'- cGGGUAGCUagccgugACCCCGGCCGcCGagugggaguccUGCCg -3'
miRNA:   3'- -CCCAUCGAg------UGGGGUUGGCaGC-----------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.