miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6214 3' -51 NC_001844.1 + 22608 0.66 0.990915
Target:  5'- ----cACUUUg--GGGCACGGUAUGCu -3'
miRNA:   3'- caaaaUGAGGacgCCUGUGCCGUACG- -5'
6214 3' -51 NC_001844.1 + 122499 0.66 0.989608
Target:  5'- ----cGCgaaCCcGCGGACGCGGcCAUcGCc -3'
miRNA:   3'- caaaaUGa--GGaCGCCUGUGCC-GUA-CG- -5'
6214 3' -51 NC_001844.1 + 117704 0.68 0.967172
Target:  5'- ----cACU-CUGCGGGCAuacuCGGCcUGCg -3'
miRNA:   3'- caaaaUGAgGACGCCUGU----GCCGuACG- -5'
6214 3' -51 NC_001844.1 + 58811 0.76 0.657062
Target:  5'- cGUUUUugUCCgGCGGGCGCagaacucgaGGCcgGCc -3'
miRNA:   3'- -CAAAAugAGGaCGCCUGUG---------CCGuaCG- -5'
6214 3' -51 NC_001844.1 + 72633 1.13 0.004063
Target:  5'- aGUUUUACUCCUGCGGACACGGCAUGCg -3'
miRNA:   3'- -CAAAAUGAGGACGCCUGUGCCGUACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.