Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 6215 | 3' | -52.5 | NC_001844.1 | + | 118641 | 0.66 | 0.977681 |
|
Target: 5'- uGCAaauugGUCCAcGUAGAUaguauCCCGCCCAu -3' miRNA: 3'- -UGUaa---UAGGU-CAUUUGgc---GGGCGGGU- -5' |
|||||||
| 6215 | 3' | -52.5 | NC_001844.1 | + | 114389 | 0.66 | 0.975138 |
|
Target: 5'- aGCuggcugCCAGcGGACCGCuCCGCCg- -3' miRNA: 3'- -UGuaaua-GGUCaUUUGGCG-GGCGGgu -5' |
|||||||
| 6215 | 3' | -52.5 | NC_001844.1 | + | 137726 | 0.66 | 0.972391 |
|
Target: 5'- cGCcgUGgcgcCCAgacGUAAACCGCCuCGCCgGg -3' miRNA: 3'- -UGuaAUa---GGU---CAUUUGGCGG-GCGGgU- -5' |
|||||||
| 6215 | 3' | -52.5 | NC_001844.1 | + | 117187 | 0.66 | 0.96625 |
|
Target: 5'- aGCAgug-CCGGc--AUCGCCCGCUCAu -3' miRNA: 3'- -UGUaauaGGUCauuUGGCGGGCGGGU- -5' |
|||||||
| 6215 | 3' | -52.5 | NC_001844.1 | + | 42980 | 0.67 | 0.946844 |
|
Target: 5'- aGCAUUgggAUCCAGUGccaaaAGCgaCGCCC-CCCAg -3' miRNA: 3'- -UGUAA---UAGGUCAU-----UUG--GCGGGcGGGU- -5' |
|||||||
| 6215 | 3' | -52.5 | NC_001844.1 | + | 70700 | 0.69 | 0.896147 |
|
Target: 5'- cGCGUUAaa-GGUGcguGCCGCCCGCUCu -3' miRNA: 3'- -UGUAAUaggUCAUu--UGGCGGGCGGGu -5' |
|||||||
| 6215 | 3' | -52.5 | NC_001844.1 | + | 20250 | 0.77 | 0.501314 |
|
Target: 5'- cGCGUUAgUguGUGcuacGCCGCCCGCCCAc -3' miRNA: 3'- -UGUAAUaGguCAUu---UGGCGGGCGGGU- -5' |
|||||||
| 6215 | 3' | -52.5 | NC_001844.1 | + | 73944 | 0.95 | 0.042939 |
|
Target: 5'- uACAUUuaCCAGUAAACCGCCCGCCCAc -3' miRNA: 3'- -UGUAAuaGGUCAUUUGGCGGGCGGGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home