miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6215 5' -52.1 NC_001844.1 + 121401 0.66 0.978266
Target:  5'- --gGGGCGGGGAaucGCaUGUGccAUAGCc -3'
miRNA:   3'- aaaUUCGCCCCU---CGgACACcuUAUCG- -5'
6215 5' -52.1 NC_001844.1 + 89081 0.66 0.970045
Target:  5'- gUUAAGCGGGGAGaaUGaGGGuccAUcGCa -3'
miRNA:   3'- aAAUUCGCCCCUCggACaCCU---UAuCG- -5'
6215 5' -52.1 NC_001844.1 + 86445 0.66 0.963457
Target:  5'- --gGGGUGGGGcaaaccgcgccAGCCUG-GGAGUAa- -3'
miRNA:   3'- aaaUUCGCCCC-----------UCGGACaCCUUAUcg -5'
6215 5' -52.1 NC_001844.1 + 143610 0.66 0.963457
Target:  5'- ----cGCGGGGcgcaGGCCUcggGGAAcAGCg -3'
miRNA:   3'- aaauuCGCCCC----UCGGAca-CCUUaUCG- -5'
6215 5' -52.1 NC_001844.1 + 79963 0.67 0.961298
Target:  5'- aUUGAGCGGguggcgcgggucgcuGGGGCUgGUGGG--GGCa -3'
miRNA:   3'- aAAUUCGCC---------------CCUCGGaCACCUuaUCG- -5'
6215 5' -52.1 NC_001844.1 + 30634 0.67 0.95981
Target:  5'- ----uGCGGGGAGCUUGUacaccuacGAAUuaaAGCa -3'
miRNA:   3'- aaauuCGCCCCUCGGACAc-------CUUA---UCG- -5'
6215 5' -52.1 NC_001844.1 + 142080 0.67 0.95981
Target:  5'- ----cGCGGGGAGCgUGUauGAAcuucUGGCa -3'
miRNA:   3'- aaauuCGCCCCUCGgACAc-CUU----AUCG- -5'
6215 5' -52.1 NC_001844.1 + 80853 0.67 0.955919
Target:  5'- --aGGGCGGGGA-CCU-UGGggUccuaGGCg -3'
miRNA:   3'- aaaUUCGCCCCUcGGAcACCuuA----UCG- -5'
6215 5' -52.1 NC_001844.1 + 140371 0.67 0.955919
Target:  5'- --cAAGCGGcaGAGCC---GGAGUAGCg -3'
miRNA:   3'- aaaUUCGCCc-CUCGGacaCCUUAUCG- -5'
6215 5' -52.1 NC_001844.1 + 30212 0.68 0.937834
Target:  5'- ---uGGUGGGaGAGaCUGUGGGucuAUGGCc -3'
miRNA:   3'- aaauUCGCCC-CUCgGACACCU---UAUCG- -5'
6215 5' -52.1 NC_001844.1 + 101076 0.71 0.815824
Target:  5'- -gUAGGCGGGGAGagUGUuuGGuguuAUGGCa -3'
miRNA:   3'- aaAUUCGCCCCUCggACA--CCu---UAUCG- -5'
6215 5' -52.1 NC_001844.1 + 73909 1.1 0.004526
Target:  5'- aUUUAAGCGGGGAGCCUGUGGAAUAGCu -3'
miRNA:   3'- -AAAUUCGCCCCUCGGACACCUUAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.