Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6218 | 5' | -54.4 | NC_001844.1 | + | 116060 | 0.65 | 0.951379 |
Target: 5'- cGGCGGG--GCCgACCAGaaCCUggcccagUUCUGc -3' miRNA: 3'- -CCGCCCuaUGG-UGGUCgaGGA-------AAGAC- -5' |
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6218 | 5' | -54.4 | NC_001844.1 | + | 121683 | 0.66 | 0.947545 |
Target: 5'- cGGgGGGAgGCC-CC-GCUCCUcucCUGa -3' miRNA: 3'- -CCgCCCUaUGGuGGuCGAGGAaa-GAC- -5' |
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6218 | 5' | -54.4 | NC_001844.1 | + | 113694 | 0.67 | 0.910983 |
Target: 5'- --aGGGAgUACCGCCAGCggg-UUCUGc -3' miRNA: 3'- ccgCCCU-AUGGUGGUCGaggaAAGAC- -5' |
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6218 | 5' | -54.4 | NC_001844.1 | + | 66731 | 0.67 | 0.898333 |
Target: 5'- cGGCGGcGcUACCACCAGCaUCUa----- -3' miRNA: 3'- -CCGCC-CuAUGGUGGUCG-AGGaaagac -5' |
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6218 | 5' | -54.4 | NC_001844.1 | + | 143351 | 0.67 | 0.898333 |
Target: 5'- -cCGGGAgcucccccGCCGCCGGCUCCa----- -3' miRNA: 3'- ccGCCCUa-------UGGUGGUCGAGGaaagac -5' |
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6218 | 5' | -54.4 | NC_001844.1 | + | 101178 | 0.68 | 0.870206 |
Target: 5'- uGGCGaGGuGUACCGCCAGCguggCCa----- -3' miRNA: 3'- -CCGC-CC-UAUGGUGGUCGa---GGaaagac -5' |
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6218 | 5' | -54.4 | NC_001844.1 | + | 144595 | 0.69 | 0.838565 |
Target: 5'- cGGCGGGcuccacgGCC-CCGGCUCCg----- -3' miRNA: 3'- -CCGCCCua-----UGGuGGUCGAGGaaagac -5' |
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6218 | 5' | -54.4 | NC_001844.1 | + | 89437 | 0.71 | 0.717241 |
Target: 5'- gGGgGGGaAUGCCAcCCAGCcauUCCUgaCUGg -3' miRNA: 3'- -CCgCCC-UAUGGU-GGUCG---AGGAaaGAC- -5' |
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6218 | 5' | -54.4 | NC_001844.1 | + | 132243 | 0.72 | 0.676385 |
Target: 5'- aGGUGGGcccacacGCCaACCGGCUCCacUCUGa -3' miRNA: 3'- -CCGCCCua-----UGG-UGGUCGAGGaaAGAC- -5' |
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6218 | 5' | -54.4 | NC_001844.1 | + | 98029 | 0.77 | 0.400431 |
Target: 5'- gGGCGGGGUuuugACCGCgAGCUCUUUUUa- -3' miRNA: 3'- -CCGCCCUA----UGGUGgUCGAGGAAAGac -5' |
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6218 | 5' | -54.4 | NC_001844.1 | + | 78107 | 1.1 | 0.003074 |
Target: 5'- aGGCGGGAUACCACCAGCUCCUUUCUGu -3' miRNA: 3'- -CCGCCCUAUGGUGGUCGAGGAAAGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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