Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
622 | 3' | -65.1 | AC_000017.1 | + | 17534 | 0.88 | 0.004826 |
Target: 5'- gCCGcCGCCGUCGCCGUCGCCagCCCg -3' miRNA: 3'- gGGCaGCGGCAGCGGCGGCGGagGGG- -5' |
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622 | 3' | -65.1 | AC_000017.1 | + | 17374 | 0.66 | 0.240972 |
Target: 5'- cCCCGgcguccgCGCCGUucgaggaaguacggCGCCGCCaGCgcgcuaCUgCCCg -3' miRNA: 3'- -GGGCa------GCGGCA--------------GCGGCGG-CG------GAgGGG- -5' |
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622 | 3' | -65.1 | AC_000017.1 | + | 13005 | 0.66 | 0.236851 |
Target: 5'- aCUCG-CGCCuGUUGCUGCUGCUaauagcgCCCUu -3' miRNA: 3'- -GGGCaGCGG-CAGCGGCGGCGGa------GGGG- -5' |
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622 | 3' | -65.1 | AC_000017.1 | + | 23618 | 0.66 | 0.224842 |
Target: 5'- cCCCG-CGCCacuggGUCgucuucauucaGCCGCCGCaccgugcgcuuacCUCCCUu -3' miRNA: 3'- -GGGCaGCGG-----CAG-----------CGGCGGCG-------------GAGGGG- -5' |
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622 | 3' | -65.1 | AC_000017.1 | + | 16094 | 0.66 | 0.214426 |
Target: 5'- ----aCGCCcaCGCCGCCGCCagugUCCaCCg -3' miRNA: 3'- gggcaGCGGcaGCGGCGGCGG----AGG-GG- -5' |
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622 | 3' | -65.1 | AC_000017.1 | + | 3782 | 0.67 | 0.198824 |
Target: 5'- gCCGUUggagacugcaGCCucCGCCGCCGCUUCagCCg -3' miRNA: 3'- gGGCAG----------CGGcaGCGGCGGCGGAGg-GG- -5' |
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622 | 3' | -65.1 | AC_000017.1 | + | 16198 | 0.67 | 0.179568 |
Target: 5'- -aCGUCGCCacCGCCGCCGa---CCCg -3' miRNA: 3'- ggGCAGCGGcaGCGGCGGCggagGGG- -5' |
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622 | 3' | -65.1 | AC_000017.1 | + | 18594 | 0.68 | 0.153786 |
Target: 5'- gCCGUcCGCCGUuguuguaaccCGCCcuaGCCGCgCgUCCCUg -3' miRNA: 3'- gGGCA-GCGGCA----------GCGG---CGGCG-G-AGGGG- -5' |
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622 | 3' | -65.1 | AC_000017.1 | + | 22037 | 0.69 | 0.131405 |
Target: 5'- uCCUG-CGCCGUagCGCCauuGCCuCUUCCCCc -3' miRNA: 3'- -GGGCaGCGGCA--GCGG---CGGcGGAGGGG- -5' |
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622 | 3' | -65.1 | AC_000017.1 | + | 12095 | 0.66 | 0.219856 |
Target: 5'- gCgGUCGCUGagcucgCGCCGCCGgCUCacgCUCa -3' miRNA: 3'- gGgCAGCGGCa-----GCGGCGGCgGAG---GGG- -5' |
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622 | 3' | -65.1 | AC_000017.1 | + | 2215 | 0.67 | 0.198824 |
Target: 5'- gCUGcUGCUGUUGCUGCUGCUgcUCCuCCg -3' miRNA: 3'- gGGCaGCGGCAGCGGCGGCGG--AGG-GG- -5' |
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622 | 3' | -65.1 | AC_000017.1 | + | 9654 | 0.67 | 0.193848 |
Target: 5'- aUCGUuagCGCCGUaucccUGCCGCacggcaGCC-CCCCg -3' miRNA: 3'- gGGCA---GCGGCA-----GCGGCGg-----CGGaGGGG- -5' |
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622 | 3' | -65.1 | AC_000017.1 | + | 25382 | 0.69 | 0.13851 |
Target: 5'- --aGUCGCggacguaGUCGCgGCgCGCCUCgCCCu -3' miRNA: 3'- gggCAGCGg------CAGCGgCG-GCGGAG-GGG- -5' |
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622 | 3' | -65.1 | AC_000017.1 | + | 17807 | 0.72 | 0.087989 |
Target: 5'- gCCCGUCagGCCGUgGCCgGCCauGCCcCUCCu -3' miRNA: 3'- -GGGCAG--CGGCAgCGG-CGG--CGGaGGGG- -5' |
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622 | 3' | -65.1 | AC_000017.1 | + | 26818 | 0.72 | 0.074762 |
Target: 5'- gCCGcUGCUGUUGCUGCCGCUgCCgCCg -3' miRNA: 3'- gGGCaGCGGCAGCGGCGGCGGaGG-GG- -5' |
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622 | 3' | -65.1 | AC_000017.1 | + | 9811 | 0.73 | 0.065217 |
Target: 5'- cCCCGacCGCCGccCGCUGCCGCC-CgCCa -3' miRNA: 3'- -GGGCa-GCGGCa-GCGGCGGCGGaGgGG- -5' |
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622 | 3' | -65.1 | AC_000017.1 | + | 15139 | 0.76 | 0.036414 |
Target: 5'- uUCCG-CGCCGcugccacuguugUUGCCGCCGCCUgcgccacCCCCg -3' miRNA: 3'- -GGGCaGCGGC------------AGCGGCGGCGGA-------GGGG- -5' |
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622 | 3' | -65.1 | AC_000017.1 | + | 2246 | 0.78 | 0.030046 |
Target: 5'- uCCUGcCGCCGcCGCCGCCugGCUUCCUCc -3' miRNA: 3'- -GGGCaGCGGCaGCGGCGG--CGGAGGGG- -5' |
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622 | 3' | -65.1 | AC_000017.1 | + | 9491 | 0.91 | 0.002518 |
Target: 5'- uCCCGgugCGCCGUCGUCGCCGCCgugUCCCCc -3' miRNA: 3'- -GGGCa--GCGGCAGCGGCGGCGG---AGGGG- -5' |
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622 | 3' | -65.1 | AC_000017.1 | + | 14273 | 0.66 | 0.242756 |
Target: 5'- aCCCaG-CGCCGcCGCCacuggcGCCGCgCUCaCCa -3' miRNA: 3'- -GGG-CaGCGGCaGCGG------CGGCG-GAGgGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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