Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
622 | 5' | -53.2 | AC_000017.1 | + | 3857 | 0.73 | 0.328574 |
Target: 5'- ------cAGCGGCUGAagcGGCGGCGgaggCUg -3' miRNA: 3'- gguuuuuUCGCCGACU---CCGCCGCa---GA- -5' |
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622 | 5' | -53.2 | AC_000017.1 | + | 8471 | 0.76 | 0.191622 |
Target: 5'- uCCAG--GGGCuGGUUGGuGGCGGCGUCg -3' miRNA: 3'- -GGUUuuUUCG-CCGACU-CCGCCGCAGa -5' |
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622 | 5' | -53.2 | AC_000017.1 | + | 9744 | 0.7 | 0.471483 |
Target: 5'- aCCGuggcGGGCGGCaGcGGGCGGCgGUCg -3' miRNA: 3'- -GGUuuu-UUCGCCGaC-UCCGCCG-CAGa -5' |
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622 | 5' | -53.2 | AC_000017.1 | + | 10343 | 0.69 | 0.536861 |
Target: 5'- aCCAAAAAGuGCGGCgGcGGCuGGCGg-- -3' miRNA: 3'- -GGUUUUUU-CGCCGaCuCCG-CCGCaga -5' |
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622 | 5' | -53.2 | AC_000017.1 | + | 10455 | 0.66 | 0.697032 |
Target: 5'- uCCAGGugaugccGGCGGCgguggugGAGGCGcGCGg-- -3' miRNA: 3'- -GGUUUuu-----UCGCCGa------CUCCGC-CGCaga -5' |
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622 | 5' | -53.2 | AC_000017.1 | + | 11146 | 0.69 | 0.503713 |
Target: 5'- gUCAGGAGGggcaacauccGCGGCUGAcGCGGCGg-- -3' miRNA: 3'- -GGUUUUUU----------CGCCGACUcCGCCGCaga -5' |
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622 | 5' | -53.2 | AC_000017.1 | + | 12330 | 0.67 | 0.639692 |
Target: 5'- aCGGAcccGGCGGUgcGGGCGGCG-CUg -3' miRNA: 3'- gGUUUuu-UCGCCGacUCCGCCGCaGA- -5' |
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622 | 5' | -53.2 | AC_000017.1 | + | 13606 | 0.71 | 0.43021 |
Target: 5'- aCAGcgcGAGCaGGCaGAGGCGGCG-CUg -3' miRNA: 3'- gGUUuu-UUCG-CCGaCUCCGCCGCaGA- -5' |
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622 | 5' | -53.2 | AC_000017.1 | + | 14192 | 0.68 | 0.559375 |
Target: 5'- cCUAcGAGAGCGuGgUGAGcGCGGCGcCa -3' miRNA: 3'- -GGUuUUUUCGC-CgACUC-CGCCGCaGa -5' |
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622 | 5' | -53.2 | AC_000017.1 | + | 15048 | 0.68 | 0.558243 |
Target: 5'- aCCGAAcagggcgGGGGUGGCgcAGGCGGCGg-- -3' miRNA: 3'- -GGUUU-------UUUCGCCGacUCCGCCGCaga -5' |
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622 | 5' | -53.2 | AC_000017.1 | + | 15196 | 0.7 | 0.482113 |
Target: 5'- -aGGAGAAGCGcGCUGAGGCcgaGGCa--- -3' miRNA: 3'- ggUUUUUUCGC-CGACUCCG---CCGcaga -5' |
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622 | 5' | -53.2 | AC_000017.1 | + | 20802 | 0.67 | 0.639692 |
Target: 5'- -----cAAGC-GUUGAGGCGGUGUUg -3' miRNA: 3'- gguuuuUUCGcCGACUCCGCCGCAGa -5' |
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622 | 5' | -53.2 | AC_000017.1 | + | 23938 | 0.67 | 0.651223 |
Target: 5'- ---uGGGGGCGcGCggGGGGCGGCGg-- -3' miRNA: 3'- gguuUUUUCGC-CGa-CUCCGCCGCaga -5' |
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622 | 5' | -53.2 | AC_000017.1 | + | 23976 | 1.09 | 0.000851 |
Target: 5'- cCCAAAAAAGCGGCUGAGGCGGCGUCUc -3' miRNA: 3'- -GGUUUUUUCGCCGACUCCGCCGCAGA- -5' |
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622 | 5' | -53.2 | AC_000017.1 | + | 28299 | 0.66 | 0.719572 |
Target: 5'- gCAGGuuuGGGUGGgUGAagacGGUGGCGUUUa -3' miRNA: 3'- gGUUUu--UUCGCCgACU----CCGCCGCAGA- -5' |
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622 | 5' | -53.2 | AC_000017.1 | + | 28489 | 0.66 | 0.708343 |
Target: 5'- aCAAucAGGCGG-UGGGuGCGGCGa-- -3' miRNA: 3'- gGUUuuUUCGCCgACUC-CGCCGCaga -5' |
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622 | 5' | -53.2 | AC_000017.1 | + | 29465 | 0.72 | 0.337043 |
Target: 5'- uCCAGGAAAGCcugacuuuaaGGUUGuAGGCGuGUGUCUu -3' miRNA: 3'- -GGUUUUUUCG----------CCGAC-UCCGC-CGCAGA- -5' |
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622 | 5' | -53.2 | AC_000017.1 | + | 33176 | 0.67 | 0.662735 |
Target: 5'- uCCAAcuu-GCGGUUGcucaacGGGCGGCGa-- -3' miRNA: 3'- -GGUUuuuuCGCCGAC------UCCGCCGCaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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