miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6223 5' -56.8 NC_001844.1 + 136065 0.66 0.864115
Target:  5'- gGGCCgauccggAGCUauuucccCGACAcGcCGCCGCCGCCGc -3'
miRNA:   3'- -CUGG-------UCGA-------GCUGUaC-GUGGUGGUGGC- -5'
6223 5' -56.8 NC_001844.1 + 115252 0.67 0.816996
Target:  5'- gGGCCcgGGcCUCGGCcUGgACCAUCACCc -3'
miRNA:   3'- -CUGG--UC-GAGCUGuACgUGGUGGUGGc -5'
6223 5' -56.8 NC_001844.1 + 101420 0.67 0.816996
Target:  5'- uGCCAGCgagcCGGaugGCACCGCCAgCu -3'
miRNA:   3'- cUGGUCGa---GCUguaCGUGGUGGUgGc -5'
6223 5' -56.8 NC_001844.1 + 144606 0.67 0.816996
Target:  5'- gGAUCagAGCUCGGCggGCuCCACgGCCc -3'
miRNA:   3'- -CUGG--UCGAGCUGuaCGuGGUGgUGGc -5'
6223 5' -56.8 NC_001844.1 + 10568 0.67 0.816996
Target:  5'- gGGCCAGUaaGuCAUGUGCCAUUACUGa -3'
miRNA:   3'- -CUGGUCGagCuGUACGUGGUGGUGGC- -5'
6223 5' -56.8 NC_001844.1 + 116296 0.67 0.799361
Target:  5'- -cCCGGgUCGGac-GCcCCACCACCGg -3'
miRNA:   3'- cuGGUCgAGCUguaCGuGGUGGUGGC- -5'
6223 5' -56.8 NC_001844.1 + 110895 0.68 0.771794
Target:  5'- aGGCCAGCa-GcUGUGCcaGCCGCCACUGg -3'
miRNA:   3'- -CUGGUCGagCuGUACG--UGGUGGUGGC- -5'
6223 5' -56.8 NC_001844.1 + 13528 0.68 0.762343
Target:  5'- -cCCAGCUCGGCuUGUA--GCCGCUGg -3'
miRNA:   3'- cuGGUCGAGCUGuACGUggUGGUGGC- -5'
6223 5' -56.8 NC_001844.1 + 80410 0.69 0.733334
Target:  5'- cACgCGGCUCuguauGGCGUGCugCGCCACa- -3'
miRNA:   3'- cUG-GUCGAG-----CUGUACGugGUGGUGgc -5'
6223 5' -56.8 NC_001844.1 + 66738 0.69 0.723476
Target:  5'- --aCAGUUgCGGCG-GCGCUACCACCa -3'
miRNA:   3'- cugGUCGA-GCUGUaCGUGGUGGUGGc -5'
6223 5' -56.8 NC_001844.1 + 114382 0.69 0.713539
Target:  5'- uGCCAGCg-GACc-GCuCCGCCGCCGg -3'
miRNA:   3'- cUGGUCGagCUGuaCGuGGUGGUGGC- -5'
6223 5' -56.8 NC_001844.1 + 123517 0.73 0.454501
Target:  5'- aGACaugAGCUcCGACAUGCuuacaGCCGCCACUGc -3'
miRNA:   3'- -CUGg--UCGA-GCUGUACG-----UGGUGGUGGC- -5'
6223 5' -56.8 NC_001844.1 + 26233 0.77 0.293362
Target:  5'- cACgAGCUCGAgAUGCGCCcagauCCACCGu -3'
miRNA:   3'- cUGgUCGAGCUgUACGUGGu----GGUGGC- -5'
6223 5' -56.8 NC_001844.1 + 106545 1.07 0.002803
Target:  5'- uGACCAGCUCGACAUGCACCACCACCGc -3'
miRNA:   3'- -CUGGUCGAGCUGUACGUGGUGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.