Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6230 | 3' | -56.2 | NC_001844.1 | + | 37456 | 0.66 | 0.90194 |
Target: 5'- aGGUccucuaucuccacGCCuAGGACCCCCAcAGCaucACCa -3' miRNA: 3'- aCCA-------------UGG-UCUUGGGGGU-UCGga-UGGc -5' |
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6230 | 3' | -56.2 | NC_001844.1 | + | 114136 | 0.66 | 0.889437 |
Target: 5'- cUGG-ACUGGGcCCCCCGAcguGUCUGCCc -3' miRNA: 3'- -ACCaUGGUCUuGGGGGUU---CGGAUGGc -5' |
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6230 | 3' | -56.2 | NC_001844.1 | + | 44776 | 0.66 | 0.874661 |
Target: 5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3' miRNA: 3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5' |
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6230 | 3' | -56.2 | NC_001844.1 | + | 44722 | 0.66 | 0.874661 |
Target: 5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3' miRNA: 3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5' |
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6230 | 3' | -56.2 | NC_001844.1 | + | 44668 | 0.66 | 0.874661 |
Target: 5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3' miRNA: 3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5' |
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6230 | 3' | -56.2 | NC_001844.1 | + | 44614 | 0.66 | 0.874661 |
Target: 5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3' miRNA: 3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5' |
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6230 | 3' | -56.2 | NC_001844.1 | + | 44560 | 0.66 | 0.874661 |
Target: 5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3' miRNA: 3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5' |
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6230 | 3' | -56.2 | NC_001844.1 | + | 44506 | 0.66 | 0.874661 |
Target: 5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3' miRNA: 3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5' |
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6230 | 3' | -56.2 | NC_001844.1 | + | 44452 | 0.66 | 0.874661 |
Target: 5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3' miRNA: 3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5' |
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6230 | 3' | -56.2 | NC_001844.1 | + | 44398 | 0.66 | 0.874661 |
Target: 5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3' miRNA: 3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5' |
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6230 | 3' | -56.2 | NC_001844.1 | + | 44344 | 0.66 | 0.874661 |
Target: 5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3' miRNA: 3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5' |
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6230 | 3' | -56.2 | NC_001844.1 | + | 120279 | 0.66 | 0.868031 |
Target: 5'- aUGGU--CAGAGCCgCCGggaAGCCUGgCGg -3' miRNA: 3'- -ACCAugGUCUUGGgGGU---UCGGAUgGC- -5' |
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6230 | 3' | -56.2 | NC_001844.1 | + | 116490 | 0.66 | 0.867283 |
Target: 5'- cUGcGUugGCCGGGGCCUCUAAGCgcaagcgCUGCCa -3' miRNA: 3'- -AC-CA--UGGUCUUGGGGGUUCG-------GAUGGc -5' |
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6230 | 3' | -56.2 | NC_001844.1 | + | 117822 | 0.67 | 0.860461 |
Target: 5'- aGGUA--AGAGCUCCCGggggacGGCUUACCa -3' miRNA: 3'- aCCAUggUCUUGGGGGU------UCGGAUGGc -5' |
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6230 | 3' | -56.2 | NC_001844.1 | + | 126792 | 0.67 | 0.860461 |
Target: 5'- aGGU-UUGGGGCCCCUcuGCCUGCUu -3' miRNA: 3'- aCCAuGGUCUUGGGGGuuCGGAUGGc -5' |
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6230 | 3' | -56.2 | NC_001844.1 | + | 113248 | 0.67 | 0.852683 |
Target: 5'- cUGGUugCAGAucACCCUgGGGUgaGCCc -3' miRNA: 3'- -ACCAugGUCU--UGGGGgUUCGgaUGGc -5' |
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6230 | 3' | -56.2 | NC_001844.1 | + | 121830 | 0.67 | 0.852683 |
Target: 5'- gGGUcuccACCGGcgcGGCgCCUAGGUCUACCa -3' miRNA: 3'- aCCA----UGGUC---UUGgGGGUUCGGAUGGc -5' |
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6230 | 3' | -56.2 | NC_001844.1 | + | 9258 | 0.67 | 0.844705 |
Target: 5'- gUGGUACCuacGACCUaCAAGCC-ACCa -3' miRNA: 3'- -ACCAUGGuc-UUGGGgGUUCGGaUGGc -5' |
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6230 | 3' | -56.2 | NC_001844.1 | + | 114470 | 0.68 | 0.802043 |
Target: 5'- --uUACCuucGACCCCCAGGCCcuggcUACCa -3' miRNA: 3'- accAUGGuc-UUGGGGGUUCGG-----AUGGc -5' |
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6230 | 3' | -56.2 | NC_001844.1 | + | 144468 | 0.68 | 0.802043 |
Target: 5'- gUGGaACCcGAGCCCCUcGGCCUggGCUc -3' miRNA: 3'- -ACCaUGGuCUUGGGGGuUCGGA--UGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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