miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6230 3' -56.2 NC_001844.1 + 44398 0.66 0.874661
Target:  5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3'
miRNA:   3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5'
6230 3' -56.2 NC_001844.1 + 44452 0.66 0.874661
Target:  5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3'
miRNA:   3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5'
6230 3' -56.2 NC_001844.1 + 44506 0.66 0.874661
Target:  5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3'
miRNA:   3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5'
6230 3' -56.2 NC_001844.1 + 44560 0.66 0.874661
Target:  5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3'
miRNA:   3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5'
6230 3' -56.2 NC_001844.1 + 44614 0.66 0.874661
Target:  5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3'
miRNA:   3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5'
6230 3' -56.2 NC_001844.1 + 44668 0.66 0.874661
Target:  5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3'
miRNA:   3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5'
6230 3' -56.2 NC_001844.1 + 44722 0.66 0.874661
Target:  5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3'
miRNA:   3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5'
6230 3' -56.2 NC_001844.1 + 44776 0.66 0.874661
Target:  5'- cGGaGCCGGGGCCgCUgcggguuuggacgGAGCCgggGCCGc -3'
miRNA:   3'- aCCaUGGUCUUGGgGG-------------UUCGGa--UGGC- -5'
6230 3' -56.2 NC_001844.1 + 114136 0.66 0.889437
Target:  5'- cUGG-ACUGGGcCCCCCGAcguGUCUGCCc -3'
miRNA:   3'- -ACCaUGGUCUuGGGGGUU---CGGAUGGc -5'
6230 3' -56.2 NC_001844.1 + 37456 0.66 0.90194
Target:  5'- aGGUccucuaucuccacGCCuAGGACCCCCAcAGCaucACCa -3'
miRNA:   3'- aCCA-------------UGG-UCUUGGGGGU-UCGga-UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.