miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6231 5' -54 NC_001844.1 + 141598 0.66 0.960725
Target:  5'- aCGCaGaCUugGGCCGCugGUccuuGGGAGc -3'
miRNA:   3'- -GCGgC-GAugCUGGCGugCGuu--UUCUC- -5'
6231 5' -54 NC_001844.1 + 10677 0.66 0.953094
Target:  5'- gGCCGCUugGACa----GCAAAGGGc -3'
miRNA:   3'- gCGGCGAugCUGgcgugCGUUUUCUc -5'
6231 5' -54 NC_001844.1 + 72071 0.66 0.948927
Target:  5'- aCGuuGCUACGGCCaGCcuCGCAAu---- -3'
miRNA:   3'- -GCggCGAUGCUGG-CGu-GCGUUuucuc -5'
6231 5' -54 NC_001844.1 + 8182 0.66 0.948927
Target:  5'- gCGCCGCUAUGGCCucuucaaACGCAu----- -3'
miRNA:   3'- -GCGGCGAUGCUGGcg-----UGCGUuuucuc -5'
6231 5' -54 NC_001844.1 + 58543 0.66 0.948927
Target:  5'- aGCCagguGCUGCGugCGUGCGCcuAAAGcGg -3'
miRNA:   3'- gCGG----CGAUGCugGCGUGCGu-UUUCuC- -5'
6231 5' -54 NC_001844.1 + 117116 0.66 0.944522
Target:  5'- cCGCgGCUACaggGGCCGguCGCAGGGa-- -3'
miRNA:   3'- -GCGgCGAUG---CUGGCguGCGUUUUcuc -5'
6231 5' -54 NC_001844.1 + 72605 0.67 0.929851
Target:  5'- aCGCCGUacacAUGGCCGUACaCAAcAAGAGu -3'
miRNA:   3'- -GCGGCGa---UGCUGGCGUGcGUU-UUCUC- -5'
6231 5' -54 NC_001844.1 + 60596 0.67 0.929851
Target:  5'- gCGCaCGCaGCGcCCcaaGCugGCGAGAGAa -3'
miRNA:   3'- -GCG-GCGaUGCuGG---CGugCGUUUUCUc -5'
6231 5' -54 NC_001844.1 + 3871 0.67 0.92447
Target:  5'- uCGCCGCUGCcucugGACCuaACGU---GGAGu -3'
miRNA:   3'- -GCGGCGAUG-----CUGGcgUGCGuuuUCUC- -5'
6231 5' -54 NC_001844.1 + 140730 0.68 0.880012
Target:  5'- gGCCGCgcUGGCUGCGCGgAu--GAGg -3'
miRNA:   3'- gCGGCGauGCUGGCGUGCgUuuuCUC- -5'
6231 5' -54 NC_001844.1 + 136439 0.7 0.833078
Target:  5'- uGCCGCUGa---CGCGCuCAGGAGAGg -3'
miRNA:   3'- gCGGCGAUgcugGCGUGcGUUUUCUC- -5'
6231 5' -54 NC_001844.1 + 94776 0.72 0.700654
Target:  5'- aCGUgaaCGCUGCGcucACCGCGCGCAGAugcuaGGAa -3'
miRNA:   3'- -GCG---GCGAUGC---UGGCGUGCGUUU-----UCUc -5'
6231 5' -54 NC_001844.1 + 61188 0.76 0.490639
Target:  5'- gCGCCGUugguguuuggauaugUACGAuCUGCGCGCAGAAGGc -3'
miRNA:   3'- -GCGGCG---------------AUGCU-GGCGUGCGUUUUCUc -5'
6231 5' -54 NC_001844.1 + 136313 0.81 0.280733
Target:  5'- -cCCGCUACG-CCGCGCGguGGGGAGg -3'
miRNA:   3'- gcGGCGAUGCuGGCGUGCguUUUCUC- -5'
6231 5' -54 NC_001844.1 + 115883 1.08 0.004778
Target:  5'- cCGCCGCUACGACCGCACGCAAAAGAGc -3'
miRNA:   3'- -GCGGCGAUGCUGGCGUGCGUUUUCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.