Results 1 - 11 of 11 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6232 | 3' | -54.2 | NC_001844.1 | + | 129726 | 0.66 | 0.952634 |
Target: 5'- uGAGUUaAUAUACGgaCgCCCGgGGGCg -3' miRNA: 3'- cUUCAAgUAUGUGCgaG-GGGCgCCUG- -5' |
|||||||
6232 | 3' | -54.2 | NC_001844.1 | + | 118314 | 0.66 | 0.948419 |
Target: 5'- -uAGUUgGUGCgACGCUCUaCCGgGGAg -3' miRNA: 3'- cuUCAAgUAUG-UGCGAGG-GGCgCCUg -5' |
|||||||
6232 | 3' | -54.2 | NC_001844.1 | + | 136460 | 0.66 | 0.943963 |
Target: 5'- ------gGUGCGCGCUaugUCCGCGGAUg -3' miRNA: 3'- cuucaagUAUGUGCGAg--GGGCGCCUG- -5' |
|||||||
6232 | 3' | -54.2 | NC_001844.1 | + | 142581 | 0.66 | 0.934316 |
Target: 5'- cGGGgaCAgcGgACGCUCCgCCGCGGAg -3' miRNA: 3'- cUUCaaGUa-UgUGCGAGG-GGCGCCUg -5' |
|||||||
6232 | 3' | -54.2 | NC_001844.1 | + | 18528 | 0.66 | 0.933808 |
Target: 5'- cAAGUUCAUccggaggGCGCGUUUCgCGCGGuCc -3' miRNA: 3'- cUUCAAGUA-------UGUGCGAGGgGCGCCuG- -5' |
|||||||
6232 | 3' | -54.2 | NC_001844.1 | + | 76170 | 0.68 | 0.885865 |
Target: 5'- aAAGUUUauauaaAUACGCGCUgaCCCGCGuGAUa -3' miRNA: 3'- cUUCAAG------UAUGUGCGAg-GGGCGC-CUG- -5' |
|||||||
6232 | 3' | -54.2 | NC_001844.1 | + | 142119 | 0.69 | 0.855964 |
Target: 5'- gGggGUUa--GCAaCGCUCCCCGUgaugaaGGACc -3' miRNA: 3'- -CuuCAAguaUGU-GCGAGGGGCG------CCUG- -5' |
|||||||
6232 | 3' | -54.2 | NC_001844.1 | + | 122508 | 0.69 | 0.839728 |
Target: 5'- ---uUUCAgugACGCGaa-CCCGCGGACg -3' miRNA: 3'- cuucAAGUa--UGUGCgagGGGCGCCUG- -5' |
|||||||
6232 | 3' | -54.2 | NC_001844.1 | + | 114609 | 0.7 | 0.795852 |
Target: 5'- gGAGGcUUCAgACGCGUUCCCCaUGGAg -3' miRNA: 3'- -CUUC-AAGUaUGUGCGAGGGGcGCCUg -5' |
|||||||
6232 | 3' | -54.2 | NC_001844.1 | + | 36373 | 0.75 | 0.532473 |
Target: 5'- -----cCAUACACGCUUCCCG-GGACu -3' miRNA: 3'- cuucaaGUAUGUGCGAGGGGCgCCUG- -5' |
|||||||
6232 | 3' | -54.2 | NC_001844.1 | + | 116025 | 1.1 | 0.003103 |
Target: 5'- aGAAGUUCAUACACGCUCCCCGCGGACa -3' miRNA: 3'- -CUUCAAGUAUGUGCGAGGGGCGCCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home