Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6233 | 5' | -59.9 | NC_001844.1 | + | 20251 | 0.66 | 0.745799 |
Target: 5'- aCGCgUuagugUGUGCUACGCCGcccGCCCAc- -3' miRNA: 3'- -GCGgA-----GCGCGAUGCGGCuu-CGGGUcu -5' |
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6233 | 5' | -59.9 | NC_001844.1 | + | 120374 | 0.66 | 0.707285 |
Target: 5'- aCGUCUgGgCGCcACGgCGGAGCgCAGAa -3' miRNA: 3'- -GCGGAgC-GCGaUGCgGCUUCGgGUCU- -5' |
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6233 | 5' | -59.9 | NC_001844.1 | + | 113455 | 0.67 | 0.697483 |
Target: 5'- uGCagggUCGCGCU--GCUGGAGCCCGa- -3' miRNA: 3'- gCGg---AGCGCGAugCGGCUUCGGGUcu -5' |
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6233 | 5' | -59.9 | NC_001844.1 | + | 141627 | 0.67 | 0.697483 |
Target: 5'- gGCa--GCGCuUGCGCUuaGAGGCCCGGc -3' miRNA: 3'- gCGgagCGCG-AUGCGG--CUUCGGGUCu -5' |
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6233 | 5' | -59.9 | NC_001844.1 | + | 122401 | 0.68 | 0.637865 |
Target: 5'- aGCCUCuGCGCguuUGuUCGAuGGCCCGGGu -3' miRNA: 3'- gCGGAG-CGCGau-GC-GGCU-UCGGGUCU- -5' |
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6233 | 5' | -59.9 | NC_001844.1 | + | 113529 | 0.68 | 0.627868 |
Target: 5'- uCGCCUgcggacgGCGCggaGCCGggGCCguGGa -3' miRNA: 3'- -GCGGAg------CGCGaugCGGCuuCGGguCU- -5' |
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6233 | 5' | -59.9 | NC_001844.1 | + | 137787 | 0.68 | 0.625869 |
Target: 5'- cCGCuCUCGCcgaggucGCUGCGCCcguaccugucucgGggGCCgGGAn -3' miRNA: 3'- -GCG-GAGCG-------CGAUGCGG-------------CuuCGGgUCU- -5' |
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6233 | 5' | -59.9 | NC_001844.1 | + | 101902 | 0.7 | 0.510043 |
Target: 5'- aCGCCUC-CGUUAUGCUGAAGCUa--- -3' miRNA: 3'- -GCGGAGcGCGAUGCGGCUUCGGgucu -5' |
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6233 | 5' | -59.9 | NC_001844.1 | + | 137739 | 0.7 | 0.500581 |
Target: 5'- gCGUUcUGCGCUcCGCCGuggcGCCCAGAc -3' miRNA: 3'- -GCGGaGCGCGAuGCGGCuu--CGGGUCU- -5' |
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6233 | 5' | -59.9 | NC_001844.1 | + | 88803 | 0.7 | 0.472683 |
Target: 5'- uGCCUccaCGCGCUGCGC-GAGcGCCCuGGc -3' miRNA: 3'- gCGGA---GCGCGAUGCGgCUU-CGGGuCU- -5' |
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6233 | 5' | -59.9 | NC_001844.1 | + | 142763 | 0.71 | 0.463558 |
Target: 5'- cCGCgaggCGCaGCU-CGUCGggGCCCAGGc -3' miRNA: 3'- -GCGga--GCG-CGAuGCGGCuuCGGGUCU- -5' |
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6233 | 5' | -59.9 | NC_001844.1 | + | 138039 | 0.71 | 0.44559 |
Target: 5'- aCGCCcCGUGUcuacucgauuUGCGCCaagcGAGCCCAGAc -3' miRNA: 3'- -GCGGaGCGCG----------AUGCGGc---UUCGGGUCU- -5' |
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6233 | 5' | -59.9 | NC_001844.1 | + | 116202 | 1.08 | 0.001376 |
Target: 5'- cCGCCUCGCGCUACGCCGAAGCCCAGAc -3' miRNA: 3'- -GCGGAGCGCGAUGCGGCUUCGGGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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