Results 1 - 14 of 14 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
624 | 5' | -59.7 | AC_000017.1 | + | 12562 | 0.66 | 0.369834 |
Target: 5'- cUCGUGCGUg--GGGUUugcGCGCGCCGGg -3' miRNA: 3'- -AGCGCGCAgagUUCGGu--CGCGCGGUC- -5' |
|||||||
624 | 5' | -59.7 | AC_000017.1 | + | 12209 | 0.66 | 0.369834 |
Target: 5'- -gGCGCGUCggcuugGGGcCCAGCGCagGUCAGc -3' miRNA: 3'- agCGCGCAGag----UUC-GGUCGCG--CGGUC- -5' |
|||||||
624 | 5' | -59.7 | AC_000017.1 | + | 16418 | 0.66 | 0.369834 |
Target: 5'- gUGCGCGaCUCGguuagcGGCCugcGCGUGCCc- -3' miRNA: 3'- aGCGCGCaGAGU------UCGGu--CGCGCGGuc -5' |
|||||||
624 | 5' | -59.7 | AC_000017.1 | + | 5571 | 0.67 | 0.327803 |
Target: 5'- cUCGUGCGgcgcCUCcuccaagggcAAGCU-GCGCGCCAa -3' miRNA: 3'- -AGCGCGCa---GAG----------UUCGGuCGCGCGGUc -5' |
|||||||
624 | 5' | -59.7 | AC_000017.1 | + | 26942 | 0.67 | 0.327803 |
Target: 5'- cUCGCGgGUCgauaCGGGUUcguuGgGCGCCAGa -3' miRNA: 3'- -AGCGCgCAGa---GUUCGGu---CgCGCGGUC- -5' |
|||||||
624 | 5' | -59.7 | AC_000017.1 | + | 34841 | 0.67 | 0.312009 |
Target: 5'- aUCGUGCagGUCUgCAcGGaCCAGCGCgGCCAc -3' miRNA: 3'- -AGCGCG--CAGA-GU-UC-GGUCGCG-CGGUc -5' |
|||||||
624 | 5' | -59.7 | AC_000017.1 | + | 11637 | 0.67 | 0.312009 |
Target: 5'- cUCGCGCG-CUaCAAGCguGCGCaCguGg -3' miRNA: 3'- -AGCGCGCaGA-GUUCGguCGCGcGguC- -5' |
|||||||
624 | 5' | -59.7 | AC_000017.1 | + | 16276 | 0.67 | 0.2968 |
Target: 5'- cCGCGCGUU---GGgCGGCaGUGCCGGg -3' miRNA: 3'- aGCGCGCAGaguUCgGUCG-CGCGGUC- -5' |
|||||||
624 | 5' | -59.7 | AC_000017.1 | + | 1363 | 0.67 | 0.294569 |
Target: 5'- gUCGgGCGUCUCAGGaUAGCaggcaccauuuuagGaCGCCGGg -3' miRNA: 3'- -AGCgCGCAGAGUUCgGUCG--------------C-GCGGUC- -5' |
|||||||
624 | 5' | -59.7 | AC_000017.1 | + | 17383 | 0.68 | 0.252669 |
Target: 5'- cCGCGCcgUUCGAggaaguacggcgccGCCAGCGCGCUAc -3' miRNA: 3'- aGCGCGcaGAGUU--------------CGGUCGCGCGGUc -5' |
|||||||
624 | 5' | -59.7 | AC_000017.1 | + | 18624 | 0.69 | 0.241724 |
Target: 5'- cCGCGCGUCcCugcGCCGuGC-CGCCAGc -3' miRNA: 3'- aGCGCGCAGaGuu-CGGU-CGcGCGGUC- -5' |
|||||||
624 | 5' | -59.7 | AC_000017.1 | + | 10725 | 0.71 | 0.165977 |
Target: 5'- cCGCGUGUCgaaccCAGGUguGCGaCGUCAGa -3' miRNA: 3'- aGCGCGCAGa----GUUCGguCGC-GCGGUC- -5' |
|||||||
624 | 5' | -59.7 | AC_000017.1 | + | 12642 | 0.71 | 0.152794 |
Target: 5'- -aGCGCGUCguagacCAGGCCGGCcucaucGgGCCGGa -3' miRNA: 3'- agCGCGCAGa-----GUUCGGUCG------CgCGGUC- -5' |
|||||||
624 | 5' | -59.7 | AC_000017.1 | + | 25093 | 1.08 | 0.000248 |
Target: 5'- cUCGCGCGUCUCAAGCCAGCGCGCCAGc -3' miRNA: 3'- -AGCGCGCAGAGUUCGGUCGCGCGGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home