miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6240 5' -60.7 NC_001844.1 + 41931 0.66 0.717702
Target:  5'- gGGCUCAGUa-GGGcuccagucugccCUCUugUGGCGCa -3'
miRNA:   3'- -UCGAGUCGcaCCCa-----------GAGGugGCCGCG- -5'
6240 5' -60.7 NC_001844.1 + 41522 0.66 0.690424
Target:  5'- cGGCUucCAG-GUGGGggcggCUACCGGCaGCg -3'
miRNA:   3'- -UCGA--GUCgCACCCaga--GGUGGCCG-CG- -5'
6240 5' -60.7 NC_001844.1 + 136428 0.66 0.690424
Target:  5'- cGCUCaggagaggAGCG-GGGcCUCCccccgaaaucugGCCGcGCGCg -3'
miRNA:   3'- uCGAG--------UCGCaCCCaGAGG------------UGGC-CGCG- -5'
6240 5' -60.7 NC_001844.1 + 117667 0.66 0.690424
Target:  5'- gAGCUUAGgGUgcugcuuuuGGGUUUCUAgUGGgGCg -3'
miRNA:   3'- -UCGAGUCgCA---------CCCAGAGGUgGCCgCG- -5'
6240 5' -60.7 NC_001844.1 + 144600 0.67 0.640935
Target:  5'- gAGCUCGGC--GGG-CUCCAcggccCCGGCuccGCg -3'
miRNA:   3'- -UCGAGUCGcaCCCaGAGGU-----GGCCG---CG- -5'
6240 5' -60.7 NC_001844.1 + 48732 0.69 0.532658
Target:  5'- uGGCUaaaAGCGUGGcGUCaaaUCCaguguACgGGCGCu -3'
miRNA:   3'- -UCGAg--UCGCACC-CAG---AGG-----UGgCCGCG- -5'
6240 5' -60.7 NC_001844.1 + 69719 0.72 0.335277
Target:  5'- cGC-CGG-GUGGGcgUUCCGCUGGCGCu -3'
miRNA:   3'- uCGaGUCgCACCCa-GAGGUGGCCGCG- -5'
6240 5' -60.7 NC_001844.1 + 144663 0.73 0.306853
Target:  5'- cAGcCUCGGCGUcGGG-CUCCAgCaGCGCg -3'
miRNA:   3'- -UC-GAGUCGCA-CCCaGAGGUgGcCGCG- -5'
6240 5' -60.7 NC_001844.1 + 51029 0.74 0.265891
Target:  5'- cGCUCGGCcUGGGcCccaucagauucaauUCCACCGGCGg -3'
miRNA:   3'- uCGAGUCGcACCCaG--------------AGGUGGCCGCg -5'
6240 5' -60.7 NC_001844.1 + 121841 1.11 0.00069
Target:  5'- gAGCUCAGCGUGGGUCUCCACCGGCGCg -3'
miRNA:   3'- -UCGAGUCGCACCCAGAGGUGGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.