miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6243 5' -48.9 NC_001844.1 + 115908 0.66 0.999121
Target:  5'- ---aCGCGGcAGCCucgguGGCCaUGAGccGCCg -3'
miRNA:   3'- cauaGCGCC-UUGGu----CUGGaACUU--UGG- -5'
6243 5' -48.9 NC_001844.1 + 27232 0.66 0.999007
Target:  5'- gGUAUCGUGGA-CCAGAgaaaaguuugaaggcUCUUGAGu-- -3'
miRNA:   3'- -CAUAGCGCCUuGGUCU---------------GGAACUUugg -5'
6243 5' -48.9 NC_001844.1 + 97676 0.66 0.998924
Target:  5'- ---cCGCGGuguuaaGACCAG-CCUUGAGgguuggaaGCCc -3'
miRNA:   3'- cauaGCGCC------UUGGUCuGGAACUU--------UGG- -5'
6243 5' -48.9 NC_001844.1 + 140864 0.66 0.998924
Target:  5'- ---cCGCGGGGCUcggGGGCCgggGAAGgCg -3'
miRNA:   3'- cauaGCGCCUUGG---UCUGGaa-CUUUgG- -5'
6243 5' -48.9 NC_001844.1 + 115267 0.66 0.998414
Target:  5'- ---aCGCGGAGggagcccgggcCCGGGCCUcGGccugGACCa -3'
miRNA:   3'- cauaGCGCCUU-----------GGUCUGGAaCU----UUGG- -5'
6243 5' -48.9 NC_001844.1 + 29854 0.66 0.998414
Target:  5'- uGUAU-GUGGAccCCAGACCUguuuuuGACCg -3'
miRNA:   3'- -CAUAgCGCCUu-GGUCUGGAacu---UUGG- -5'
6243 5' -48.9 NC_001844.1 + 113577 0.7 0.972557
Target:  5'- ---gCGCGGccAACCgaugGGGCCUUGggGCa -3'
miRNA:   3'- cauaGCGCC--UUGG----UCUGGAACuuUGg -5'
6243 5' -48.9 NC_001844.1 + 144118 0.71 0.966349
Target:  5'- -cGUCcUGGGGCCAGuCCUcuaggGAGACCg -3'
miRNA:   3'- caUAGcGCCUUGGUCuGGAa----CUUUGG- -5'
6243 5' -48.9 NC_001844.1 + 30549 0.73 0.920584
Target:  5'- aUGUCGUGGAA-CAGGCCauaUUGGAACa -3'
miRNA:   3'- cAUAGCGCCUUgGUCUGG---AACUUUGg -5'
6243 5' -48.9 NC_001844.1 + 84006 0.74 0.895011
Target:  5'- --cUCGCGucgaGGGCCAGGCUUaagUGAAACCu -3'
miRNA:   3'- cauAGCGC----CUUGGUCUGGA---ACUUUGG- -5'
6243 5' -48.9 NC_001844.1 + 143616 0.74 0.873171
Target:  5'- gGUAagCGCGGGGCgCAGGCCUcggGGAACa -3'
miRNA:   3'- -CAUa-GCGCCUUG-GUCUGGAa--CUUUGg -5'
6243 5' -48.9 NC_001844.1 + 122123 0.75 0.849196
Target:  5'- -cGUCGCGGAACCc-GCCUgugGggGCa -3'
miRNA:   3'- caUAGCGCCUUGGucUGGAa--CuuUGg -5'
6243 5' -48.9 NC_001844.1 + 113516 0.8 0.566302
Target:  5'- ---gCGCGGAGCCgGGGCCgUGGAGCCc -3'
miRNA:   3'- cauaGCGCCUUGG-UCUGGaACUUUGG- -5'
6243 5' -48.9 NC_001844.1 + 134154 1.12 0.00928
Target:  5'- uGUAUCGCGGAACCAGACCUUGAAACCc -3'
miRNA:   3'- -CAUAGCGCCUUGGUCUGGAACUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.