miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6245 3' -63 NC_001844.1 + 250 0.69 0.435661
Target:  5'- cUCCAUUgaaaUCCCAUC-CCCCACCgCCCa -3'
miRNA:   3'- -GGGUGGa---GGGGUGGaGGGGUGGaGGG- -5'
6245 3' -63 NC_001844.1 + 14755 0.68 0.479235
Target:  5'- aCCACCcgCagaCCACg--CCCACCUCCCc -3'
miRNA:   3'- gGGUGGa-Gg--GGUGgagGGGUGGAGGG- -5'
6245 3' -63 NC_001844.1 + 25676 0.66 0.62975
Target:  5'- gCCCACCauugaaaCC-CCUCCCCuaaAUUUCCCu -3'
miRNA:   3'- -GGGUGGagg----GGuGGAGGGG---UGGAGGG- -5'
6245 3' -63 NC_001844.1 + 28642 0.66 0.649084
Target:  5'- gCCugCUgaCgGaaaaCUCCCCGCCUCCa -3'
miRNA:   3'- gGGugGAggGgUg---GAGGGGUGGAGGg -5'
6245 3' -63 NC_001844.1 + 35978 0.69 0.470345
Target:  5'- gCCCACCUuuuuuUCCCACaugcgaauaCgCGCCUCCCu -3'
miRNA:   3'- -GGGUGGA-----GGGGUGgag------GgGUGGAGGG- -5'
6245 3' -63 NC_001844.1 + 46844 0.67 0.566269
Target:  5'- uCCCGCCgcgguuuaugcagCCCAUUUCUgaagauuaacuaCCACCUCCCc -3'
miRNA:   3'- -GGGUGGag-----------GGGUGGAGG------------GGUGGAGGG- -5'
6245 3' -63 NC_001844.1 + 63708 0.67 0.571035
Target:  5'- gCCGCUccaaguacaagcgUCCCaacuGCCUCuCCCACCUUaCCa -3'
miRNA:   3'- gGGUGG-------------AGGGg---UGGAG-GGGUGGAG-GG- -5'
6245 3' -63 NC_001844.1 + 106525 0.68 0.524836
Target:  5'- aCCACCgcUCCCACaaCCCCGCUUUgCg -3'
miRNA:   3'- gGGUGGa-GGGGUGgaGGGGUGGAGgG- -5'
6245 3' -63 NC_001844.1 + 112616 0.74 0.239708
Target:  5'- gUCCugCUCCUCcCCUUCCUgcuCCUCCCc -3'
miRNA:   3'- -GGGugGAGGGGuGGAGGGGu--GGAGGG- -5'
6245 3' -63 NC_001844.1 + 113879 0.69 0.452822
Target:  5'- gCCACCUCagCCGCgCggUCCUCACUUCCa -3'
miRNA:   3'- gGGUGGAGg-GGUG-G--AGGGGUGGAGGg -5'
6245 3' -63 NC_001844.1 + 114503 0.67 0.552979
Target:  5'- aCCCGCUguUCCCCgagGCCUggcgCCCCGCgCUUaCCu -3'
miRNA:   3'- -GGGUGG--AGGGG---UGGA----GGGGUG-GAG-GG- -5'
6245 3' -63 NC_001844.1 + 114840 0.68 0.515575
Target:  5'- aCCGgCaCCCUacGCCUCCCCgaacgACCgUCCCg -3'
miRNA:   3'- gGGUgGaGGGG--UGGAGGGG-----UGG-AGGG- -5'
6245 3' -63 NC_001844.1 + 114914 0.71 0.326968
Target:  5'- gCUCG-CUCCCCACCgg-CUGCCUCCCa -3'
miRNA:   3'- -GGGUgGAGGGGUGGaggGGUGGAGGG- -5'
6245 3' -63 NC_001844.1 + 115073 0.78 0.117111
Target:  5'- uCCCGCaUCCCCGCCUUguggCCCACUguUCCCg -3'
miRNA:   3'- -GGGUGgAGGGGUGGAG----GGGUGG--AGGG- -5'
6245 3' -63 NC_001844.1 + 115484 0.68 0.524836
Target:  5'- aUCC-CCUCuCCCGCCUgCCC---UCCCg -3'
miRNA:   3'- -GGGuGGAG-GGGUGGAgGGGuggAGGG- -5'
6245 3' -63 NC_001844.1 + 117005 0.67 0.57199
Target:  5'- uUCCACC-CUCgGCCUCCCCcgaggggagGCCggcgCCa -3'
miRNA:   3'- -GGGUGGaGGGgUGGAGGGG---------UGGa---GGg -5'
6245 3' -63 NC_001844.1 + 117270 0.68 0.523907
Target:  5'- gCCACCccggcgguagucaUCCcgCCGCCUUCCCcgGCC-CCCg -3'
miRNA:   3'- gGGUGG-------------AGG--GGUGGAGGGG--UGGaGGG- -5'
6245 3' -63 NC_001844.1 + 118524 0.7 0.402501
Target:  5'- gCCCACCg-CCCAUUg-CCC-CCUCCCu -3'
miRNA:   3'- -GGGUGGagGGGUGGagGGGuGGAGGG- -5'
6245 3' -63 NC_001844.1 + 121542 0.72 0.31318
Target:  5'- aCCGCCUCCgCAgUCUCCCCcgguucucacACC-CCCg -3'
miRNA:   3'- gGGUGGAGGgGU-GGAGGGG----------UGGaGGG- -5'
6245 3' -63 NC_001844.1 + 122478 0.69 0.435661
Target:  5'- aUCGCCUCUaCCGCCacgauUUCCCACCcugcugUCCCg -3'
miRNA:   3'- gGGUGGAGG-GGUGG-----AGGGGUGG------AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.