Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6246 | 3' | -56.7 | NC_001844.1 | + | 113537 | 0.66 | 0.855681 |
Target: 5'- gGUGUACCUcgccugcggacggcGCGgAgCCGGGGCCGu-- -3' miRNA: 3'- -CGCAUGGA--------------CGCaUgGGCUCCGGCuuu -5' |
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6246 | 3' | -56.7 | NC_001844.1 | + | 135491 | 0.67 | 0.842168 |
Target: 5'- cGCGUcgccGCCUGUGUcgccgcGCCUGccgccGGCCGAc- -3' miRNA: 3'- -CGCA----UGGACGCA------UGGGCu----CCGGCUuu -5' |
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6246 | 3' | -56.7 | NC_001844.1 | + | 116172 | 0.67 | 0.825565 |
Target: 5'- cCGUACCUGUauuuGUGCCCGAGaUgGggGa -3' miRNA: 3'- cGCAUGGACG----CAUGGGCUCcGgCuuU- -5' |
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6246 | 3' | -56.7 | NC_001844.1 | + | 137763 | 0.67 | 0.808258 |
Target: 5'- cCGUACCUGUc--UCgGGGGCCGGGAg -3' miRNA: 3'- cGCAUGGACGcauGGgCUCCGGCUUU- -5' |
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6246 | 3' | -56.7 | NC_001844.1 | + | 117699 | 0.69 | 0.693467 |
Target: 5'- uGCGggcauacucgGCCUGCGUcuGCCC--GGCCGAGc -3' miRNA: 3'- -CGCa---------UGGACGCA--UGGGcuCCGGCUUu -5' |
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6246 | 3' | -56.7 | NC_001844.1 | + | 88363 | 0.7 | 0.673189 |
Target: 5'- aGCGUcACCaaacUGuUGUACCUGGGGUCGGAAc -3' miRNA: 3'- -CGCA-UGG----AC-GCAUGGGCUCCGGCUUU- -5' |
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6246 | 3' | -56.7 | NC_001844.1 | + | 117045 | 0.7 | 0.652776 |
Target: 5'- aGCGacaccgagACCUGCccggggucuCCCGGGGCCGAGu -3' miRNA: 3'- -CGCa-------UGGACGcau------GGGCUCCGGCUUu -5' |
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6246 | 3' | -56.7 | NC_001844.1 | + | 136025 | 1.08 | 0.002508 |
Target: 5'- cGCGUACCUGCGUACCCGAGGCCGAAAg -3' miRNA: 3'- -CGCAUGGACGCAUGGGCUCCGGCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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