Results 1 - 13 of 13 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6246 | 5' | -63.8 | NC_001844.1 | + | 5937 | 0.66 | 0.576484 |
Target: 5'- cCCCCCaGCCCCCAUGGuGCacGGaGUg-- -3' miRNA: 3'- aGGGGGaCGGGGGUGUC-CG--CC-CAagg -5' |
|||||||
6246 | 5' | -63.8 | NC_001844.1 | + | 109004 | 0.66 | 0.547822 |
Target: 5'- cCCCCCaaccuagaCCaCCAUGGGCGGGUauuaCCa -3' miRNA: 3'- aGGGGGacg-----GG-GGUGUCCGCCCAa---GG- -5' |
|||||||
6246 | 5' | -63.8 | NC_001844.1 | + | 143169 | 0.67 | 0.482962 |
Target: 5'- gCCUUCUGCCCCgAgGGGCgagccugggucuGGGUggcCCg -3' miRNA: 3'- aGGGGGACGGGGgUgUCCG------------CCCAa--GG- -5' |
|||||||
6246 | 5' | -63.8 | NC_001844.1 | + | 120344 | 0.68 | 0.465103 |
Target: 5'- gCUCCCgGCCCCCgagACAGGUacGGGcgCa -3' miRNA: 3'- aGGGGGaCGGGGG---UGUCCG--CCCaaGg -5' |
|||||||
6246 | 5' | -63.8 | NC_001844.1 | + | 134520 | 0.68 | 0.456302 |
Target: 5'- cUCUUCUGCUgCCGCuGGCucGGGUUCUg -3' miRNA: 3'- aGGGGGACGGgGGUGuCCG--CCCAAGG- -5' |
|||||||
6246 | 5' | -63.8 | NC_001844.1 | + | 117242 | 0.69 | 0.389356 |
Target: 5'- cUUCCCCgGCCCCCGagccccgcGGCGGGa--- -3' miRNA: 3'- -AGGGGGaCGGGGGUgu------CCGCCCaagg -5' |
|||||||
6246 | 5' | -63.8 | NC_001844.1 | + | 137903 | 0.7 | 0.33631 |
Target: 5'- cCUCCCUGuCCCCCucauCuGGUGGGaaCCc -3' miRNA: 3'- aGGGGGAC-GGGGGu---GuCCGCCCaaGG- -5' |
|||||||
6246 | 5' | -63.8 | NC_001844.1 | + | 115968 | 0.71 | 0.288733 |
Target: 5'- aCCCCCUGCCCCaCAU---CGGGgacgCCa -3' miRNA: 3'- aGGGGGACGGGG-GUGuccGCCCaa--GG- -5' |
|||||||
6246 | 5' | -63.8 | NC_001844.1 | + | 141831 | 0.72 | 0.263408 |
Target: 5'- uUCCCCCauaGCgcacccuCCCCGguGGUGGGgcgUCCg -3' miRNA: 3'- -AGGGGGa--CG-------GGGGUguCCGCCCa--AGG- -5' |
|||||||
6246 | 5' | -63.8 | NC_001844.1 | + | 96102 | 0.73 | 0.219732 |
Target: 5'- aUCCagCCCggacCCCCCGCGGGaCGGGUcCCa -3' miRNA: 3'- -AGG--GGGac--GGGGGUGUCC-GCCCAaGG- -5' |
|||||||
6246 | 5' | -63.8 | NC_001844.1 | + | 114690 | 0.74 | 0.190822 |
Target: 5'- cCCUCCUGCCCCaaagCGCAGGgUGGGUaCUa -3' miRNA: 3'- aGGGGGACGGGG----GUGUCC-GCCCAaGG- -5' |
|||||||
6246 | 5' | -63.8 | NC_001844.1 | + | 137183 | 0.78 | 0.093707 |
Target: 5'- gCgCCCUGUCCCCAaAGGCGGGcgCCc -3' miRNA: 3'- aGgGGGACGGGGGUgUCCGCCCaaGG- -5' |
|||||||
6246 | 5' | -63.8 | NC_001844.1 | + | 135991 | 1.11 | 0.000403 |
Target: 5'- cUCCCCCUGCCCCCACAGGCGGGUUCCg -3' miRNA: 3'- -AGGGGGACGGGGGUGUCCGCCCAAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home