miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6248 3' -49.8 NC_001844.1 + 28818 0.67 0.989282
Target:  5'- aCGCUAGAAGCUgCGAAauGGUCAGUugUg -3'
miRNA:   3'- -GUGAUCUUUGG-GUUU--UCGGUCGugGg -5'
6248 3' -49.8 NC_001844.1 + 78012 0.68 0.98612
Target:  5'- gGCgcGAuuuACCCGAGAcGCCAgGCgGCCCu -3'
miRNA:   3'- gUGauCUu--UGGGUUUU-CGGU-CG-UGGG- -5'
6248 3' -49.8 NC_001844.1 + 111350 0.68 0.985409
Target:  5'- aACUAGAccaacuguuugauACCCcGGAGCUGGCGCUg -3'
miRNA:   3'- gUGAUCUu------------UGGGuUUUCGGUCGUGGg -5'
6248 3' -49.8 NC_001844.1 + 95895 0.68 0.984292
Target:  5'- uGCUGGuAGGCgCA--AGCaGGCACCCa -3'
miRNA:   3'- gUGAUC-UUUGgGUuuUCGgUCGUGGG- -5'
6248 3' -49.8 NC_001844.1 + 141326 0.68 0.98371
Target:  5'- cCGCUaaucugcccaGGGGACCCGGuGGCCgguuggguuuuugcGGCGCUCg -3'
miRNA:   3'- -GUGA----------UCUUUGGGUUuUCGG--------------UCGUGGG- -5'
6248 3' -49.8 NC_001844.1 + 80470 0.68 0.982288
Target:  5'- gGCUAuGGGACCCAGuuugaAGUACCCa -3'
miRNA:   3'- gUGAU-CUUUGGGUUuucggUCGUGGG- -5'
6248 3' -49.8 NC_001844.1 + 5309 0.68 0.976698
Target:  5'- aACUGGAAACagCGcgccugggaaaaacAGAGCCaagaagcAGCACCCg -3'
miRNA:   3'- gUGAUCUUUGg-GU--------------UUUCGG-------UCGUGGG- -5'
6248 3' -49.8 NC_001844.1 + 140246 0.69 0.975118
Target:  5'- ---aGGGAGCaCCAAAAGCgGGCaaGCCUg -3'
miRNA:   3'- gugaUCUUUG-GGUUUUCGgUCG--UGGG- -5'
6248 3' -49.8 NC_001844.1 + 114771 0.69 0.975118
Target:  5'- gCGCUccGAGCCCcuGGAGCCGGCGgcgggggagcuCCCg -3'
miRNA:   3'- -GUGAucUUUGGGu-UUUCGGUCGU-----------GGG- -5'
6248 3' -49.8 NC_001844.1 + 113979 0.69 0.974299
Target:  5'- gACUGGc--CCCAGGacggucccgccaucAGCCAGUACCa -3'
miRNA:   3'- gUGAUCuuuGGGUUU--------------UCGGUCGUGGg -5'
6248 3' -49.8 NC_001844.1 + 137884 0.69 0.974022
Target:  5'- uGgUGGGAACCCAuccccacgcuccAGCCAGCGCa- -3'
miRNA:   3'- gUgAUCUUUGGGUuu----------UCGGUCGUGgg -5'
6248 3' -49.8 NC_001844.1 + 22158 0.69 0.972313
Target:  5'- gACUAGAAauucACCUAAA--CCAGCGCaCCc -3'
miRNA:   3'- gUGAUCUU----UGGGUUUucGGUCGUG-GG- -5'
6248 3' -49.8 NC_001844.1 + 112553 0.69 0.972313
Target:  5'- cCACUuuAAGCCCcccccaAAAAGCCA-CGCCCc -3'
miRNA:   3'- -GUGAucUUUGGG------UUUUCGGUcGUGGG- -5'
6248 3' -49.8 NC_001844.1 + 116522 0.69 0.969287
Target:  5'- aCAC-AGAGcuCCCAAGGaCCAGCgGCCCa -3'
miRNA:   3'- -GUGaUCUUu-GGGUUUUcGGUCG-UGGG- -5'
6248 3' -49.8 NC_001844.1 + 17429 0.7 0.954831
Target:  5'- aGCUGGAAGaucgUCCGAGGGCaaaggcaucucCAGCACCa -3'
miRNA:   3'- gUGAUCUUU----GGGUUUUCG-----------GUCGUGGg -5'
6248 3' -49.8 NC_001844.1 + 116195 0.7 0.954831
Target:  5'- gCGCUAcgccGAAGCCCAGAccGCC-GUACCUg -3'
miRNA:   3'- -GUGAU----CUUUGGGUUUu-CGGuCGUGGG- -5'
6248 3' -49.8 NC_001844.1 + 142437 0.7 0.954831
Target:  5'- uGCgccguGGCCCGAGGGCCGcGCACaCCc -3'
miRNA:   3'- gUGaucu-UUGGGUUUUCGGU-CGUG-GG- -5'
6248 3' -49.8 NC_001844.1 + 116326 0.7 0.954419
Target:  5'- cCGCUgcucacaccauccGGAGACCCAuggcccGGGUCGGaCGCCCc -3'
miRNA:   3'- -GUGA-------------UCUUUGGGUu-----UUCGGUC-GUGGG- -5'
6248 3' -49.8 NC_001844.1 + 113742 0.7 0.94136
Target:  5'- aCGgUGGAcACCCG--GGCCGgagagcGCACCCg -3'
miRNA:   3'- -GUgAUCUuUGGGUuuUCGGU------CGUGGG- -5'
6248 3' -49.8 NC_001844.1 + 114501 0.7 0.94136
Target:  5'- cCGCUGuu--CCCcGAGGCCuGGCGCCCc -3'
miRNA:   3'- -GUGAUcuuuGGGuUUUCGG-UCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.