Results 1 - 13 of 13 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6249 | 5' | -57.2 | NC_001844.1 | + | 130073 | 0.66 | 0.867019 |
Target: 5'- uGGGCGUGUagcagCCACggUUCGAACGUCa -3' miRNA: 3'- uCCCGCGCAgca--GGUG--GGGUUUGUAG- -5' |
|||||||
6249 | 5' | -57.2 | NC_001844.1 | + | 143253 | 0.66 | 0.850953 |
Target: 5'- uAGGGUGCcg-GUCCGCCCCcucccugcgaggaGAccgGCAUCu -3' miRNA: 3'- -UCCCGCGcagCAGGUGGGG-------------UU---UGUAG- -5' |
|||||||
6249 | 5' | -57.2 | NC_001844.1 | + | 69462 | 0.66 | 0.842993 |
Target: 5'- uGGGCGUGUCucuagccuuugagGUCaACCUCGGACAg- -3' miRNA: 3'- uCCCGCGCAG-------------CAGgUGGGGUUUGUag -5' |
|||||||
6249 | 5' | -57.2 | NC_001844.1 | + | 85176 | 0.66 | 0.827353 |
Target: 5'- gGGGGUGagcaauaaaaCGUCGUCUauuGCCCCcGACGa- -3' miRNA: 3'- -UCCCGC----------GCAGCAGG---UGGGGuUUGUag -5' |
|||||||
6249 | 5' | -57.2 | NC_001844.1 | + | 129332 | 0.67 | 0.801385 |
Target: 5'- uGGGUGCGUUGUUgGCCUgG-ACAUg -3' miRNA: 3'- uCCCGCGCAGCAGgUGGGgUuUGUAg -5' |
|||||||
6249 | 5' | -57.2 | NC_001844.1 | + | 144371 | 0.67 | 0.7833 |
Target: 5'- cGGGUGCGcUC-UCCGgCCCGggUGUCc -3' miRNA: 3'- uCCCGCGC-AGcAGGUgGGGUuuGUAG- -5' |
|||||||
6249 | 5' | -57.2 | NC_001844.1 | + | 80038 | 0.68 | 0.774052 |
Target: 5'- cAGGGCGuCGgCGUCCACUgCuacucuGGCGUUg -3' miRNA: 3'- -UCCCGC-GCaGCAGGUGGgGu-----UUGUAG- -5' |
|||||||
6249 | 5' | -57.2 | NC_001844.1 | + | 144890 | 0.71 | 0.55847 |
Target: 5'- gGGGGCGCGUCGgaucaacugcgcugCCgggcucACCCCAggGugAUCu -3' miRNA: 3'- -UCCCGCGCAGCa-------------GG------UGGGGU--UugUAG- -5' |
|||||||
6249 | 5' | -57.2 | NC_001844.1 | + | 137934 | 0.71 | 0.554473 |
Target: 5'- cGGGGgGCGcCGUCCACCagcccCAUCa -3' miRNA: 3'- -UCCCgCGCaGCAGGUGGgguuuGUAG- -5' |
|||||||
6249 | 5' | -57.2 | NC_001844.1 | + | 104114 | 0.72 | 0.544519 |
Target: 5'- cGGGGCGC-UCGUaUACCCCAuaAGCGUg -3' miRNA: 3'- -UCCCGCGcAGCAgGUGGGGU--UUGUAg -5' |
|||||||
6249 | 5' | -57.2 | NC_001844.1 | + | 120511 | 0.72 | 0.534623 |
Target: 5'- uAGGGCGUGcaugCGUgUACCCCAuAGCGUa -3' miRNA: 3'- -UCCCGCGCa---GCAgGUGGGGU-UUGUAg -5' |
|||||||
6249 | 5' | -57.2 | NC_001844.1 | + | 65415 | 0.72 | 0.51503 |
Target: 5'- cGGGGCGCG-CGUCCACaaCCAuuGCAg- -3' miRNA: 3'- -UCCCGCGCaGCAGGUGg-GGUu-UGUag -5' |
|||||||
6249 | 5' | -57.2 | NC_001844.1 | + | 140810 | 1.08 | 0.002333 |
Target: 5'- aAGGGCGCGUCGUCCACCCCAAACAUCc -3' miRNA: 3'- -UCCCGCGCAGCAGGUGGGGUUUGUAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home