Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6251 | 5' | -55.3 | NC_001844.1 | + | 44811 | 0.66 | 0.916943 |
Target: 5'- -----gGGUUUGGaCGGGCCGGggcCGCu -3' miRNA: 3'- cuuuugCCGGACC-GUCCGGUCau-GCG- -5' |
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6251 | 5' | -55.3 | NC_001844.1 | + | 112942 | 0.66 | 0.916943 |
Target: 5'- -uGGGCGGgUuagugGGCGGGUUAGUGgGCg -3' miRNA: 3'- cuUUUGCCgGa----CCGUCCGGUCAUgCG- -5' |
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6251 | 5' | -55.3 | NC_001844.1 | + | 112906 | 0.66 | 0.916943 |
Target: 5'- -uGGGCGGgUuagugGGCGGGUUAGUGgGCg -3' miRNA: 3'- cuUUUGCCgGa----CCGUCCGGUCAUgCG- -5' |
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6251 | 5' | -55.3 | NC_001844.1 | + | 112870 | 0.66 | 0.916943 |
Target: 5'- -uGGGCGGgUuagugGGCGGGUUAGUGgGCg -3' miRNA: 3'- cuUUUGCCgGa----CCGUCCGGUCAUgCG- -5' |
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6251 | 5' | -55.3 | NC_001844.1 | + | 112834 | 0.66 | 0.916943 |
Target: 5'- -uGGGCGGgUuagugGGCGGGUUAGUGgGCg -3' miRNA: 3'- cuUUUGCCgGa----CCGUCCGGUCAUgCG- -5' |
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6251 | 5' | -55.3 | NC_001844.1 | + | 112798 | 0.66 | 0.916943 |
Target: 5'- -uGGGCGGgUuagugGGCGGGUUAGUGgGCg -3' miRNA: 3'- cuUUUGCCgGa----CCGUCCGGUCAUgCG- -5' |
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6251 | 5' | -55.3 | NC_001844.1 | + | 112762 | 0.66 | 0.916943 |
Target: 5'- -uGGGCGGgUuagugGGCGGGUUAGUGgGCg -3' miRNA: 3'- cuUUUGCCgGa----CCGUCCGGUCAUgCG- -5' |
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6251 | 5' | -55.3 | NC_001844.1 | + | 112726 | 0.66 | 0.916943 |
Target: 5'- -uGGGCGGgUuagugGGCGGGUUAGUGgGCg -3' miRNA: 3'- cuUUUGCCgGa----CCGUCCGGUCAUgCG- -5' |
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6251 | 5' | -55.3 | NC_001844.1 | + | 143717 | 0.66 | 0.898333 |
Target: 5'- cGGAGCGGUccgCUGGCAG-CCAGcucuccaaaGCGCg -3' miRNA: 3'- cUUUUGCCG---GACCGUCcGGUCa--------UGCG- -5' |
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6251 | 5' | -55.3 | NC_001844.1 | + | 142355 | 0.67 | 0.88473 |
Target: 5'- aGAGGCaGCCUGuGCuuGGGCCGGguaGCu -3' miRNA: 3'- cUUUUGcCGGAC-CG--UCCGGUCaugCG- -5' |
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6251 | 5' | -55.3 | NC_001844.1 | + | 117462 | 0.67 | 0.870206 |
Target: 5'- aGAGAGCGaGCCaUGGCcaGCCA--GCGCa -3' miRNA: 3'- -CUUUUGC-CGG-ACCGucCGGUcaUGCG- -5' |
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6251 | 5' | -55.3 | NC_001844.1 | + | 120265 | 0.67 | 0.870206 |
Target: 5'- cGGGAA--GCCUGGCGGGCac--GCGCa -3' miRNA: 3'- -CUUUUgcCGGACCGUCCGgucaUGCG- -5' |
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6251 | 5' | -55.3 | NC_001844.1 | + | 74470 | 0.67 | 0.870206 |
Target: 5'- gGGAAGCGGCUUGccGguGGCCAuaGUucucaACGUg -3' miRNA: 3'- -CUUUUGCCGGAC--CguCCGGU--CA-----UGCG- -5' |
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6251 | 5' | -55.3 | NC_001844.1 | + | 144217 | 0.68 | 0.837733 |
Target: 5'- ---cGCGGCUgaggUGGCgcucccgGGGCCAGcgaacgGCGCa -3' miRNA: 3'- cuuuUGCCGG----ACCG-------UCCGGUCa-----UGCG- -5' |
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6251 | 5' | -55.3 | NC_001844.1 | + | 140844 | 0.68 | 0.818942 |
Target: 5'- gGAAGGCGgcgggaugacuaccGCCgGGguGGCCAaggGCGCg -3' miRNA: 3'- -CUUUUGC--------------CGGaCCguCCGGUca-UGCG- -5' |
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6251 | 5' | -55.3 | NC_001844.1 | + | 101252 | 0.68 | 0.812781 |
Target: 5'- -cGAGCGaGaCCUGGCAGGUaaacuGUAUGUg -3' miRNA: 3'- cuUUUGC-C-GGACCGUCCGgu---CAUGCG- -5' |
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6251 | 5' | -55.3 | NC_001844.1 | + | 112678 | 0.69 | 0.785477 |
Target: 5'- -uGGGCGGgUuagUGGCGGGUUAGUGgGCg -3' miRNA: 3'- cuUUUGCCgG---ACCGUCCGGUCAUgCG- -5' |
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6251 | 5' | -55.3 | NC_001844.1 | + | 140416 | 0.69 | 0.766549 |
Target: 5'- ----uCGGCCgGGCagacgcAGGCCgAGUAUGCc -3' miRNA: 3'- cuuuuGCCGGaCCG------UCCGG-UCAUGCG- -5' |
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6251 | 5' | -55.3 | NC_001844.1 | + | 122636 | 0.7 | 0.731289 |
Target: 5'- aGAGGGuCGGCCggcGGCAGGCgCGGcgacacaggcggcgACGCg -3' miRNA: 3'- -CUUUU-GCCGGa--CCGUCCG-GUCa-------------UGCG- -5' |
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6251 | 5' | -55.3 | NC_001844.1 | + | 121913 | 0.71 | 0.645318 |
Target: 5'- ---cAUGGCCUGGCGGGaaCAGccgaACGCg -3' miRNA: 3'- cuuuUGCCGGACCGUCCg-GUCa---UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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