Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6252 | 3' | -56.3 | NC_001844.1 | + | 143153 | 0.66 | 0.887146 |
Target: 5'- gGCGAGCcuGGGucuGGGuGGcccGGGAGCAGGuuGu -3' miRNA: 3'- -CGUUCG--CCU---UCC-CC---UCCUCGUCCuuC- -5' |
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6252 | 3' | -56.3 | NC_001844.1 | + | 145482 | 0.66 | 0.880148 |
Target: 5'- ---------nGGGGAGGAGCAGGAc- -3' miRNA: 3'- cguucgccuuCCCCUCCUCGUCCUuc -5' |
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6252 | 3' | -56.3 | NC_001844.1 | + | 142616 | 0.66 | 0.872926 |
Target: 5'- gGCAGGCGGGAGaGGGAucucgcuugGGucaAGCccGGGGAc -3' miRNA: 3'- -CGUUCGCCUUC-CCCU---------CC---UCG--UCCUUc -5' |
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6252 | 3' | -56.3 | NC_001844.1 | + | 114754 | 0.66 | 0.865486 |
Target: 5'- aGCcGGCGGcGGGGGAgcucccGGGGUcccgcGGAGGa -3' miRNA: 3'- -CGuUCGCCuUCCCCU------CCUCGu----CCUUC- -5' |
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6252 | 3' | -56.3 | NC_001844.1 | + | 114802 | 0.67 | 0.849976 |
Target: 5'- aCGGGCGccccAGGGGcaaGAGCGGGAAGc -3' miRNA: 3'- cGUUCGCcu--UCCCCuc-CUCGUCCUUC- -5' |
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6252 | 3' | -56.3 | NC_001844.1 | + | 138824 | 0.67 | 0.833668 |
Target: 5'- gGCGGGUauGGAuauGGGGGGGGGCAa---- -3' miRNA: 3'- -CGUUCG--CCUu--CCCCUCCUCGUccuuc -5' |
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6252 | 3' | -56.3 | NC_001844.1 | + | 43772 | 0.67 | 0.833668 |
Target: 5'- aGC-AGCuGGGAGGGGAGGuGUuGGu-- -3' miRNA: 3'- -CGuUCG-CCUUCCCCUCCuCGuCCuuc -5' |
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6252 | 3' | -56.3 | NC_001844.1 | + | 122307 | 0.68 | 0.780558 |
Target: 5'- -gAGGUGGGGagguGGGGAGGuggggaGGUGGGGAGg -3' miRNA: 3'- cgUUCGCCUU----CCCCUCC------UCGUCCUUC- -5' |
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6252 | 3' | -56.3 | NC_001844.1 | + | 122267 | 0.68 | 0.780558 |
Target: 5'- -gAGGUGGGGagguGGGGAGGuggggaGGUGGGGAGg -3' miRNA: 3'- cgUUCGCCUU----CCCCUCC------UCGUCCUUC- -5' |
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6252 | 3' | -56.3 | NC_001844.1 | + | 122227 | 0.68 | 0.780558 |
Target: 5'- -gAGGUGGGGagguGGGGAGGuggggaGGUGGGGAGg -3' miRNA: 3'- cgUUCGCCUU----CCCCUCC------UCGUCCUUC- -5' |
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6252 | 3' | -56.3 | NC_001844.1 | + | 122349 | 0.68 | 0.761686 |
Target: 5'- cGgAGGUGGGGagguGGGGAGGuggggaGGUGGGGAGg -3' miRNA: 3'- -CgUUCGCCUU----CCCCUCC------UCGUCCUUC- -5' |
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6252 | 3' | -56.3 | NC_001844.1 | + | 118968 | 0.69 | 0.712637 |
Target: 5'- ----uUGGAuGGGGuGGGGGCGGGAGGu -3' miRNA: 3'- cguucGCCUuCCCC-UCCUCGUCCUUC- -5' |
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6252 | 3' | -56.3 | NC_001844.1 | + | 100666 | 0.69 | 0.702582 |
Target: 5'- gGCAgAGCGGAaagacccgccAGGGGGGuaauaugcccGuGCAGGAAGc -3' miRNA: 3'- -CGU-UCGCCU----------UCCCCUC----------CuCGUCCUUC- -5' |
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6252 | 3' | -56.3 | NC_001844.1 | + | 122111 | 0.73 | 0.490334 |
Target: 5'- cGCcuGUGGggGcaGGGGGAGCGGGAGc -3' miRNA: 3'- -CGuuCGCCuuCc-CCUCCUCGUCCUUc -5' |
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6252 | 3' | -56.3 | NC_001844.1 | + | 145507 | 1.12 | 0.001602 |
Target: 5'- cGCAAGCGGAAGGGGAGGAGCAGGAAGg -3' miRNA: 3'- -CGUUCGCCUUCCCCUCCUCGUCCUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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