Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6254 | 5' | -59.4 | NC_001844.1 | + | 114625 | 0.75 | 0.239258 |
Target: 5'- gGGGCCACACCgC-CggGGAGGCUucagACGCg -3' miRNA: 3'- -UCCGGUGUGG-GuGuaCCUCCGG----UGUG- -5' |
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6254 | 5' | -59.4 | NC_001844.1 | + | 79046 | 0.74 | 0.302672 |
Target: 5'- uGGGCCugGaagugCCACAUcugcGGGGGCCACAa -3' miRNA: 3'- -UCCGGugUg----GGUGUA----CCUCCGGUGUg -5' |
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6254 | 5' | -59.4 | NC_001844.1 | + | 144785 | 0.71 | 0.456338 |
Target: 5'- aAGGCacagcuccagCGCGCCCAUGUGGAGGaCCgaggucgaGCGCu -3' miRNA: 3'- -UCCG----------GUGUGGGUGUACCUCC-GG--------UGUG- -5' |
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6254 | 5' | -59.4 | NC_001844.1 | + | 68436 | 0.69 | 0.522639 |
Target: 5'- uGGCCgACGCCCugGcagcccUGGAagacGCCGCGCg -3' miRNA: 3'- uCCGG-UGUGGGugU------ACCUc---CGGUGUG- -5' |
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6254 | 5' | -59.4 | NC_001844.1 | + | 136538 | 0.69 | 0.572178 |
Target: 5'- gGGGCUGUACCCcaccaGCAcGGAcacGGCCGCGCa -3' miRNA: 3'- -UCCGGUGUGGG-----UGUaCCU---CCGGUGUG- -5' |
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6254 | 5' | -59.4 | NC_001844.1 | + | 135498 | 0.69 | 0.572178 |
Target: 5'- aGGGCCACGCgucgCCGCcUGuGucGCCGCGCc -3' miRNA: 3'- -UCCGGUGUG----GGUGuAC-CucCGGUGUG- -5' |
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6254 | 5' | -59.4 | NC_001844.1 | + | 116996 | 0.68 | 0.592328 |
Target: 5'- cGGCCuCcCCCGaggGGAGGCCgGCGCc -3' miRNA: 3'- uCCGGuGuGGGUguaCCUCCGG-UGUG- -5' |
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6254 | 5' | -59.4 | NC_001844.1 | + | 113945 | 0.67 | 0.653234 |
Target: 5'- --aCCACAUCUACAUGcGGGCCACc- -3' miRNA: 3'- uccGGUGUGGGUGUACcUCCGGUGug -5' |
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6254 | 5' | -59.4 | NC_001844.1 | + | 142449 | 0.67 | 0.653234 |
Target: 5'- cGGCCGCcgucuuGCgC-CGUGGcccgaGGGCCGCGCa -3' miRNA: 3'- uCCGGUG------UGgGuGUACC-----UCCGGUGUG- -5' |
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6254 | 5' | -59.4 | NC_001844.1 | + | 57120 | 0.67 | 0.673487 |
Target: 5'- uGGCCugguccuuuacuACGCCU--GUGGAGGCCGaGCa -3' miRNA: 3'- uCCGG------------UGUGGGugUACCUCCGGUgUG- -5' |
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6254 | 5' | -59.4 | NC_001844.1 | + | 110896 | 0.67 | 0.680548 |
Target: 5'- aAGGCCAgcagcugugccagcCGCCaCugGUGGcccGGCCAgACa -3' miRNA: 3'- -UCCGGU--------------GUGG-GugUACCu--CCGGUgUG- -5' |
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6254 | 5' | -59.4 | NC_001844.1 | + | 136657 | 0.67 | 0.683568 |
Target: 5'- cGGCCGCGCCCGgucaGUGcGccuAGGCUcCACg -3' miRNA: 3'- uCCGGUGUGGGUg---UAC-C---UCCGGuGUG- -5' |
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6254 | 5' | -59.4 | NC_001844.1 | + | 120278 | 0.66 | 0.703595 |
Target: 5'- uGGUCAgAgCCGCcgGGAaGCCugGCg -3' miRNA: 3'- uCCGGUgUgGGUGuaCCUcCGGugUG- -5' |
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6254 | 5' | -59.4 | NC_001844.1 | + | 114424 | 0.66 | 0.713524 |
Target: 5'- cGGGCCu--CCgGCcagGGAGGgCGCGCg -3' miRNA: 3'- -UCCGGuguGGgUGua-CCUCCgGUGUG- -5' |
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6254 | 5' | -59.4 | NC_001844.1 | + | 122136 | 0.66 | 0.727307 |
Target: 5'- uGGCCACcgauaccgucgcggaACCCGCcuGUGGGGGCagggggaGCGg -3' miRNA: 3'- uCCGGUG---------------UGGGUG--UACCUCCGg------UGUg -5' |
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6254 | 5' | -59.4 | NC_001844.1 | + | 22783 | 0.66 | 0.733167 |
Target: 5'- uGGCCGCaACCCACAUuucaaGGuGGCUg--- -3' miRNA: 3'- uCCGGUG-UGGGUGUA-----CCuCCGGugug -5' |
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6254 | 5' | -59.4 | NC_001844.1 | + | 120930 | 0.65 | 0.751509 |
Target: 5'- uGGCCggGCGCCCGCcuuUGGGGacagggcGCC-CGCg -3' miRNA: 3'- uCCGG--UGUGGGUGu--ACCUC-------CGGuGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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