Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6255 | 5' | -56.1 | NC_001844.1 | + | 113940 | 0.66 | 0.910667 |
Target: 5'- aUCUACAUGcGGGCCACccucACCCcUcgGGu -3' miRNA: 3'- -GGGUGUACcUCCGGUG----UGGGuGuaCC- -5' |
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6255 | 5' | -56.1 | NC_001844.1 | + | 12673 | 0.66 | 0.89827 |
Target: 5'- -aCACGuUGGggugGGGUUACACCCGCGcucuuUGGg -3' miRNA: 3'- ggGUGU-ACC----UCCGGUGUGGGUGU-----ACC- -5' |
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6255 | 5' | -56.1 | NC_001844.1 | + | 115960 | 0.66 | 0.891727 |
Target: 5'- cCCCACAUcGGGGacGCCAUGgCgGCcgGGa -3' miRNA: 3'- -GGGUGUA-CCUC--CGGUGUgGgUGuaCC- -5' |
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6255 | 5' | -56.1 | NC_001844.1 | + | 120118 | 0.67 | 0.847902 |
Target: 5'- cCCCACAUGGcuGGCCGug-UgGCAUGGu -3' miRNA: 3'- -GGGUGUACCu-CCGGUgugGgUGUACC- -5' |
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6255 | 5' | -56.1 | NC_001844.1 | + | 57106 | 0.67 | 0.870764 |
Target: 5'- aCUACgccuGUGGAGGCCGagcagguGCCgGCAUGa -3' miRNA: 3'- gGGUG----UACCUCCGGUg------UGGgUGUACc -5' |
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6255 | 5' | -56.1 | NC_001844.1 | + | 114994 | 0.67 | 0.873672 |
Target: 5'- cCCCGCAgcaccagagcagcgGGGGGCCGacaACCUGCucccGGg -3' miRNA: 3'- -GGGUGUa-------------CCUCCGGUg--UGGGUGua--CC- -5' |
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6255 | 5' | -56.1 | NC_001844.1 | + | 127121 | 0.67 | 0.88427 |
Target: 5'- gUCGCAgucuUGGAGGCCAUGCaacaCACccccgguGUGGa -3' miRNA: 3'- gGGUGU----ACCUCCGGUGUGg---GUG-------UACC- -5' |
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6255 | 5' | -56.1 | NC_001844.1 | + | 140093 | 0.67 | 0.884959 |
Target: 5'- cCCCA-AUGGgagGGGCCA-ACCCACAaaggccguuUGGa -3' miRNA: 3'- -GGGUgUACC---UCCGGUgUGGGUGU---------ACC- -5' |
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6255 | 5' | -56.1 | NC_001844.1 | + | 41518 | 0.69 | 0.788135 |
Target: 5'- uUCCAgGUGGGGGCgGCuACCgGCAgcGGc -3' miRNA: 3'- -GGGUgUACCUCCGgUG-UGGgUGUa-CC- -5' |
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6255 | 5' | -56.1 | NC_001844.1 | + | 56799 | 0.7 | 0.721604 |
Target: 5'- gCCGCGuagcUGGGGuaCACAaCCACAUGGu -3' miRNA: 3'- gGGUGU----ACCUCcgGUGUgGGUGUACC- -5' |
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6255 | 5' | -56.1 | NC_001844.1 | + | 134943 | 0.7 | 0.691771 |
Target: 5'- aCCACA-GGuucAGGCU-CACCCAUGUGGc -3' miRNA: 3'- gGGUGUaCC---UCCGGuGUGGGUGUACC- -5' |
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6255 | 5' | -56.1 | NC_001844.1 | + | 114634 | 0.71 | 0.641181 |
Target: 5'- gCCGCccGaGGGGCCACACC-GCcgGGg -3' miRNA: 3'- gGGUGuaC-CUCCGGUGUGGgUGuaCC- -5' |
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6255 | 5' | -56.1 | NC_001844.1 | + | 114592 | 0.72 | 0.600529 |
Target: 5'- uCCC-CAUGGAGacuGCCACACgCCACcccccgGGg -3' miRNA: 3'- -GGGuGUACCUC---CGGUGUG-GGUGua----CC- -5' |
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6255 | 5' | -56.1 | NC_001844.1 | + | 17594 | 0.77 | 0.360529 |
Target: 5'- -gCGCAUGGcGGCUACGCCCACAc-- -3' miRNA: 3'- ggGUGUACCuCCGGUGUGGGUGUacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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