miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6256 5' -59.4 NC_001844.1 + 120930 0.65 0.751509
Target:  5'- uGGCCggGCGCCCGCcuuUGGGGacagggcGCC-CGCg -3'
miRNA:   3'- uCCGG--UGUGGGUGu--ACCUC-------CGGuGUG- -5'
6256 5' -59.4 NC_001844.1 + 22783 0.66 0.733167
Target:  5'- uGGCCGCaACCCACAUuucaaGGuGGCUg--- -3'
miRNA:   3'- uCCGGUG-UGGGUGUA-----CCuCCGGugug -5'
6256 5' -59.4 NC_001844.1 + 122136 0.66 0.727307
Target:  5'- uGGCCACcgauaccgucgcggaACCCGCcuGUGGGGGCagggggaGCGg -3'
miRNA:   3'- uCCGGUG---------------UGGGUG--UACCUCCGg------UGUg -5'
6256 5' -59.4 NC_001844.1 + 114424 0.66 0.713524
Target:  5'- cGGGCCu--CCgGCcagGGAGGgCGCGCg -3'
miRNA:   3'- -UCCGGuguGGgUGua-CCUCCgGUGUG- -5'
6256 5' -59.4 NC_001844.1 + 120278 0.66 0.703595
Target:  5'- uGGUCAgAgCCGCcgGGAaGCCugGCg -3'
miRNA:   3'- uCCGGUgUgGGUGuaCCUcCGGugUG- -5'
6256 5' -59.4 NC_001844.1 + 136657 0.67 0.683568
Target:  5'- cGGCCGCGCCCGgucaGUGcGccuAGGCUcCACg -3'
miRNA:   3'- uCCGGUGUGGGUg---UAC-C---UCCGGuGUG- -5'
6256 5' -59.4 NC_001844.1 + 110896 0.67 0.680548
Target:  5'- aAGGCCAgcagcugugccagcCGCCaCugGUGGcccGGCCAgACa -3'
miRNA:   3'- -UCCGGU--------------GUGG-GugUACCu--CCGGUgUG- -5'
6256 5' -59.4 NC_001844.1 + 57120 0.67 0.673487
Target:  5'- uGGCCugguccuuuacuACGCCU--GUGGAGGCCGaGCa -3'
miRNA:   3'- uCCGG------------UGUGGGugUACCUCCGGUgUG- -5'
6256 5' -59.4 NC_001844.1 + 113945 0.67 0.653234
Target:  5'- --aCCACAUCUACAUGcGGGCCACc- -3'
miRNA:   3'- uccGGUGUGGGUGUACcUCCGGUGug -5'
6256 5' -59.4 NC_001844.1 + 142449 0.67 0.653234
Target:  5'- cGGCCGCcgucuuGCgC-CGUGGcccgaGGGCCGCGCa -3'
miRNA:   3'- uCCGGUG------UGgGuGUACC-----UCCGGUGUG- -5'
6256 5' -59.4 NC_001844.1 + 116996 0.68 0.592328
Target:  5'- cGGCCuCcCCCGaggGGAGGCCgGCGCc -3'
miRNA:   3'- uCCGGuGuGGGUguaCCUCCGG-UGUG- -5'
6256 5' -59.4 NC_001844.1 + 135498 0.69 0.572178
Target:  5'- aGGGCCACGCgucgCCGCcUGuGucGCCGCGCc -3'
miRNA:   3'- -UCCGGUGUG----GGUGuAC-CucCGGUGUG- -5'
6256 5' -59.4 NC_001844.1 + 136538 0.69 0.572178
Target:  5'- gGGGCUGUACCCcaccaGCAcGGAcacGGCCGCGCa -3'
miRNA:   3'- -UCCGGUGUGGG-----UGUaCCU---CCGGUGUG- -5'
6256 5' -59.4 NC_001844.1 + 68436 0.69 0.522639
Target:  5'- uGGCCgACGCCCugGcagcccUGGAagacGCCGCGCg -3'
miRNA:   3'- uCCGG-UGUGGGugU------ACCUc---CGGUGUG- -5'
6256 5' -59.4 NC_001844.1 + 144785 0.71 0.456338
Target:  5'- aAGGCacagcuccagCGCGCCCAUGUGGAGGaCCgaggucgaGCGCu -3'
miRNA:   3'- -UCCG----------GUGUGGGUGUACCUCC-GG--------UGUG- -5'
6256 5' -59.4 NC_001844.1 + 79046 0.74 0.302672
Target:  5'- uGGGCCugGaagugCCACAUcugcGGGGGCCACAa -3'
miRNA:   3'- -UCCGGugUg----GGUGUA----CCUCCGGUGUg -5'
6256 5' -59.4 NC_001844.1 + 114625 0.75 0.239258
Target:  5'- gGGGCCACACCgC-CggGGAGGCUucagACGCg -3'
miRNA:   3'- -UCCGGUGUGG-GuGuaCCUCCGG----UGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.