miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6260 3' -46.9 NC_001844.1 + 121698 0.66 0.999875
Target:  5'- --cGCGCGGCcaGAUuucGGggGGAggCCCCGc -3'
miRNA:   3'- guuUGCGUUG--UUA---CCuuUCUa-GGGGU- -5'
6260 3' -46.9 NC_001844.1 + 111432 0.66 0.999854
Target:  5'- cCAAugGCAuuuguaccccuuaacGCuAAUGGuacugcuGGAUCCCCu -3'
miRNA:   3'- -GUUugCGU---------------UG-UUACCuu-----UCUAGGGGu -5'
6260 3' -46.9 NC_001844.1 + 121213 0.66 0.999838
Target:  5'- gGAACGCGuguuACGAcggcgGGGGAGAUCUUCu -3'
miRNA:   3'- gUUUGCGU----UGUUa----CCUUUCUAGGGGu -5'
6260 3' -46.9 NC_001844.1 + 32408 0.66 0.99979
Target:  5'- aCAGACGcCAAUgggggugucaGAUGGGAacAGGUUCCCc -3'
miRNA:   3'- -GUUUGC-GUUG----------UUACCUU--UCUAGGGGu -5'
6260 3' -46.9 NC_001844.1 + 127247 0.67 0.999317
Target:  5'- uGAGCGCGAUAaauuGUGGGAAGAUauuuuugaCCUUAg -3'
miRNA:   3'- gUUUGCGUUGU----UACCUUUCUA--------GGGGU- -5'
6260 3' -46.9 NC_001844.1 + 38121 0.68 0.998722
Target:  5'- uGAACgGCAGCuucuAUGGcguuGAGGUCCCUu -3'
miRNA:   3'- gUUUG-CGUUGu---UACCu---UUCUAGGGGu -5'
6260 3' -46.9 NC_001844.1 + 32344 0.68 0.998117
Target:  5'- gCGGACGCAGCAAUGcagccuuuGGGUUaCCCAa -3'
miRNA:   3'- -GUUUGCGUUGUUACcuu-----UCUAG-GGGU- -5'
6260 3' -46.9 NC_001844.1 + 143548 0.68 0.997734
Target:  5'- aCAGuaaGCAGCGcgGGcAGAG-UCCCCGg -3'
miRNA:   3'- -GUUug-CGUUGUuaCC-UUUCuAGGGGU- -5'
6260 3' -46.9 NC_001844.1 + 14524 0.73 0.961049
Target:  5'- --uACGguaAGCGGUGGAAcuGGAUCCCCu -3'
miRNA:   3'- guuUGCg--UUGUUACCUU--UCUAGGGGu -5'
6260 3' -46.9 NC_001844.1 + 87973 0.74 0.933551
Target:  5'- gCAAGCGCAuaaaGGUGGAu--GUCCCCAc -3'
miRNA:   3'- -GUUUGCGUug--UUACCUuucUAGGGGU- -5'
6260 3' -46.9 NC_001844.1 + 78826 0.75 0.921601
Target:  5'- cCAAAUGC-ACAGUGGAgcucgugAGGGUCCCUc -3'
miRNA:   3'- -GUUUGCGuUGUUACCU-------UUCUAGGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.