miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6261 5' -50.5 NC_001844.1 + 142213 0.66 0.99368
Target:  5'- cGGUcGU---AGCGGcGGCUC-AUGGCc -3'
miRNA:   3'- uCCAuCAauuUCGCC-CCGAGcUAUCG- -5'
6261 5' -50.5 NC_001844.1 + 72161 0.66 0.992692
Target:  5'- gAGGUAcaauuAGGCGGaGGUuuauauccacgUCGAUGGCc -3'
miRNA:   3'- -UCCAUcaau-UUCGCC-CCG-----------AGCUAUCG- -5'
6261 5' -50.5 NC_001844.1 + 136728 0.66 0.991586
Target:  5'- uAGGaUAGaggcacGGGCGGGGCU--AUGGCa -3'
miRNA:   3'- -UCC-AUCaau---UUCGCCCCGAgcUAUCG- -5'
6261 5' -50.5 NC_001844.1 + 122347 0.66 0.990351
Target:  5'- gAGGUGGg-GAGGUGGGGa--GGUGGg -3'
miRNA:   3'- -UCCAUCaaUUUCGCCCCgagCUAUCg -5'
6261 5' -50.5 NC_001844.1 + 122323 0.66 0.990351
Target:  5'- gAGGUGGg-GAGGUGGGGa--GGUGGg -3'
miRNA:   3'- -UCCAUCaaUUUCGCCCCgagCUAUCg -5'
6261 5' -50.5 NC_001844.1 + 122299 0.66 0.990351
Target:  5'- gAGGUGGg-GAGGUGGGGa--GGUGGg -3'
miRNA:   3'- -UCCAUCaaUUUCGCCCCgagCUAUCg -5'
6261 5' -50.5 NC_001844.1 + 122275 0.66 0.990351
Target:  5'- gAGGUGGg-GAGGUGGGGa--GGUGGg -3'
miRNA:   3'- -UCCAUCaaUUUCGCCCCgagCUAUCg -5'
6261 5' -50.5 NC_001844.1 + 122251 0.66 0.990351
Target:  5'- gAGGUGGg-GAGGUGGGGa--GGUGGg -3'
miRNA:   3'- -UCCAUCaaUUUCGCCCCgagCUAUCg -5'
6261 5' -50.5 NC_001844.1 + 122227 0.66 0.990351
Target:  5'- gAGGUGGg-GAGGUGGGGa--GGUGGg -3'
miRNA:   3'- -UCCAUCaaUUUCGCCCCgagCUAUCg -5'
6261 5' -50.5 NC_001844.1 + 143641 0.67 0.988978
Target:  5'- uGGUAGccAGGGCcuGGGGgUCGAaGGUa -3'
miRNA:   3'- uCCAUCaaUUUCG--CCCCgAGCUaUCG- -5'
6261 5' -50.5 NC_001844.1 + 12636 0.67 0.988978
Target:  5'- gGGGUguGGUUuuuGUGGGGCUCaaacGGCc -3'
miRNA:   3'- -UCCA--UCAAuuuCGCCCCGAGcua-UCG- -5'
6261 5' -50.5 NC_001844.1 + 128633 0.67 0.987457
Target:  5'- uGGUGGgcgugaaUAAAGUugGGGGUUUGGUGGa -3'
miRNA:   3'- uCCAUCa------AUUUCG--CCCCGAGCUAUCg -5'
6261 5' -50.5 NC_001844.1 + 140863 0.67 0.981917
Target:  5'- ----------cGCGGGGCUCGggGGCc -3'
miRNA:   3'- uccaucaauuuCGCCCCGAGCuaUCG- -5'
6261 5' -50.5 NC_001844.1 + 126097 0.68 0.979713
Target:  5'- uGGGaccGGUUuu-GCGGGGUUCuGcAUAGCa -3'
miRNA:   3'- -UCCa--UCAAuuuCGCCCCGAG-C-UAUCG- -5'
6261 5' -50.5 NC_001844.1 + 11460 0.68 0.976556
Target:  5'- cGGUAGUgcccccuggauguauGAGUuuGGGGCUCGugcUAGUa -3'
miRNA:   3'- uCCAUCAau-------------UUCG--CCCCGAGCu--AUCG- -5'
6261 5' -50.5 NC_001844.1 + 41783 0.69 0.958406
Target:  5'- uAGGcucgcgGGUcauAGCGGGGCgcaUGGUAGCc -3'
miRNA:   3'- -UCCa-----UCAauuUCGCCCCGa--GCUAUCG- -5'
6261 5' -50.5 NC_001844.1 + 120050 0.71 0.909749
Target:  5'- cGGGgcGUUuuguucggccaaaacGAGGCGGGGgUCGcgauUGGCg -3'
miRNA:   3'- -UCCauCAA---------------UUUCGCCCCgAGCu---AUCG- -5'
6261 5' -50.5 NC_001844.1 + 113371 0.77 0.640424
Target:  5'- cGGGUugAGUgGGAGcCGGGGUUCGGUcAGCg -3'
miRNA:   3'- -UCCA--UCAaUUUC-GCCCCGAGCUA-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.