Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6265 | 3' | -54.5 | NC_001844.1 | + | 137453 | 0.66 | 0.941254 |
Target: 5'- -----cAGCAAGCCACCCaaaacccUCUuUGGGGa -3' miRNA: 3'- acuacaUCGUUCGGUGGG-------AGA-GCCUC- -5' |
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6265 | 3' | -54.5 | NC_001844.1 | + | 78869 | 0.67 | 0.909017 |
Target: 5'- cUGGUcgAGCAAGCUGCCUg--CGGGGg -3' miRNA: 3'- -ACUAcaUCGUUCGGUGGGagaGCCUC- -5' |
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6265 | 3' | -54.5 | NC_001844.1 | + | 95404 | 0.67 | 0.894795 |
Target: 5'- uUGAgaaaacucuGCAGGCCauccACCCUCUCGGc- -3' miRNA: 3'- -ACUacau-----CGUUCGG----UGGGAGAGCCuc -5' |
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6265 | 3' | -54.5 | NC_001844.1 | + | 113933 | 0.67 | 0.882296 |
Target: 5'- ------uGCGGGCCACCCUCaccccUCGGGu -3' miRNA: 3'- acuacauCGUUCGGUGGGAG-----AGCCUc -5' |
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6265 | 3' | -54.5 | NC_001844.1 | + | 141130 | 0.68 | 0.867529 |
Target: 5'- aGAUGcuccggccccuUGGCGccGGCCuCCC-CUCGGGGg -3' miRNA: 3'- aCUAC-----------AUCGU--UCGGuGGGaGAGCCUC- -5' |
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6265 | 3' | -54.5 | NC_001844.1 | + | 21322 | 0.68 | 0.859812 |
Target: 5'- gGA-GUAGCAGGC--CCCUgUCGGAa -3' miRNA: 3'- aCUaCAUCGUUCGguGGGAgAGCCUc -5' |
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6265 | 3' | -54.5 | NC_001844.1 | + | 101304 | 0.69 | 0.800197 |
Target: 5'- aGuUGUGGCGuaAGCUgccaacugacguACCCUCUCuGGAGa -3' miRNA: 3'- aCuACAUCGU--UCGG------------UGGGAGAG-CCUC- -5' |
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6265 | 3' | -54.5 | NC_001844.1 | + | 112492 | 0.71 | 0.702439 |
Target: 5'- cGGUGggGGCcGGCCuCUCUCUCGGGc -3' miRNA: 3'- aCUACa-UCGuUCGGuGGGAGAGCCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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