miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6266 5' -55.9 NC_001844.1 + 127522 0.66 0.919495
Target:  5'- aUACCaacuGCCAGGCAuagcaguauUCUGCUAACa- -3'
miRNA:   3'- gGUGGgu--CGGUCUGU---------AGACGGUUGgg -5'
6266 5' -55.9 NC_001844.1 + 118054 0.66 0.919495
Target:  5'- aCGCCCA-CCGccCAUCgcaGCCAGCCa -3'
miRNA:   3'- gGUGGGUcGGUcuGUAGa--CGGUUGGg -5'
6266 5' -55.9 NC_001844.1 + 117200 0.66 0.919495
Target:  5'- --cUCCGGCCAGAgCAgcagUGCCGgcaucGCCCg -3'
miRNA:   3'- gguGGGUCGGUCU-GUag--ACGGU-----UGGG- -5'
6266 5' -55.9 NC_001844.1 + 136364 0.66 0.913731
Target:  5'- aCUAUUCGGCC-GAUAUgCgGUCAGCCCc -3'
miRNA:   3'- -GGUGGGUCGGuCUGUA-GaCGGUUGGG- -5'
6266 5' -55.9 NC_001844.1 + 58803 0.66 0.901494
Target:  5'- uCCGgCgGGCgCAGAacUCgagGCCGGCCCc -3'
miRNA:   3'- -GGUgGgUCG-GUCUguAGa--CGGUUGGG- -5'
6266 5' -55.9 NC_001844.1 + 51262 0.66 0.901494
Target:  5'- aCGCUguuuGCCAGACAUgaGCUAugauuuuguaGCCCg -3'
miRNA:   3'- gGUGGgu--CGGUCUGUAgaCGGU----------UGGG- -5'
6266 5' -55.9 NC_001844.1 + 5178 0.66 0.901494
Target:  5'- aUCugCCGauGCCGGACAUUgcaccGCCgGACCg -3'
miRNA:   3'- -GGugGGU--CGGUCUGUAGa----CGG-UUGGg -5'
6266 5' -55.9 NC_001844.1 + 121338 0.66 0.900858
Target:  5'- gCCuuCCGGCac-ACAUCUcaccccgGCCGGCCCg -3'
miRNA:   3'- -GGugGGUCGgucUGUAGA-------CGGUUGGG- -5'
6266 5' -55.9 NC_001844.1 + 82956 0.66 0.888326
Target:  5'- -gACCCGGUgGagUAUUUGCUGACCCa -3'
miRNA:   3'- ggUGGGUCGgUcuGUAGACGGUUGGG- -5'
6266 5' -55.9 NC_001844.1 + 39689 0.67 0.866891
Target:  5'- aCGCUCAauGCCuuGGCGUCUaacccaGCCAGCUCu -3'
miRNA:   3'- gGUGGGU--CGGu-CUGUAGA------CGGUUGGG- -5'
6266 5' -55.9 NC_001844.1 + 142312 0.67 0.859316
Target:  5'- gCCGCCgAGUgGGAgucCUGCC-GCCCg -3'
miRNA:   3'- -GGUGGgUCGgUCUguaGACGGuUGGG- -5'
6266 5' -55.9 NC_001844.1 + 90359 0.67 0.859316
Target:  5'- cCUGCCCAaguGCauaCAGGuCAaCUGCUAGCCCa -3'
miRNA:   3'- -GGUGGGU---CG---GUCU-GUaGACGGUUGGG- -5'
6266 5' -55.9 NC_001844.1 + 78119 0.67 0.859316
Target:  5'- aCCAgCUCAGCCAGGCGggauaccaCCAGCUCc -3'
miRNA:   3'- -GGU-GGGUCGGUCUGUagac----GGUUGGG- -5'
6266 5' -55.9 NC_001844.1 + 115604 0.67 0.851536
Target:  5'- aCCGCCUucaGGCUcagggaacucggAGACGUCUGCguACUg -3'
miRNA:   3'- -GGUGGG---UCGG------------UCUGUAGACGguUGGg -5'
6266 5' -55.9 NC_001844.1 + 30262 0.68 0.835387
Target:  5'- aCUGCgCUAGCCGGACAggUUGUCAuUCCg -3'
miRNA:   3'- -GGUG-GGUCGGUCUGUa-GACGGUuGGG- -5'
6266 5' -55.9 NC_001844.1 + 115755 0.68 0.818497
Target:  5'- gCUACCCGGCCcaAGcACAggCUGCCu-CUCa -3'
miRNA:   3'- -GGUGGGUCGG--UC-UGUa-GACGGuuGGG- -5'
6266 5' -55.9 NC_001844.1 + 107198 0.68 0.818497
Target:  5'- gCACCCGGUCAGGCGcauggGCUAGCa- -3'
miRNA:   3'- gGUGGGUCGGUCUGUaga--CGGUUGgg -5'
6266 5' -55.9 NC_001844.1 + 115442 0.68 0.809795
Target:  5'- cCCGCUgGGCUcgAGACugCUGCCugcGCCCu -3'
miRNA:   3'- -GGUGGgUCGG--UCUGuaGACGGu--UGGG- -5'
6266 5' -55.9 NC_001844.1 + 116341 0.68 0.808915
Target:  5'- aCCugCCAGCgCGaGCcgCUGCUcacaccauccggaGACCCa -3'
miRNA:   3'- -GGugGGUCG-GUcUGuaGACGG-------------UUGGG- -5'
6266 5' -55.9 NC_001844.1 + 96633 0.68 0.800931
Target:  5'- -gACCUguGGCCAGGCGcuaggggcuauaUCUGCUAGCgCg -3'
miRNA:   3'- ggUGGG--UCGGUCUGU------------AGACGGUUGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.