miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6267 3' -48.2 NC_001844.1 + 121657 0.66 0.999264
Target:  5'- aGCGCGUcagcgcauccGCGGACAUAGCgc-GCa -3'
miRNA:   3'- -CGCGCAuuua------CGCUUGUGUCGagaUG- -5'
6267 3' -48.2 NC_001844.1 + 86386 0.66 0.999165
Target:  5'- aCGCGUGGGucgcUGCGAAUAaggcgUAGCaCUGCa -3'
miRNA:   3'- cGCGCAUUU----ACGCUUGU-----GUCGaGAUG- -5'
6267 3' -48.2 NC_001844.1 + 33774 0.66 0.998973
Target:  5'- -gGCGUcgGUGCGcACGC-GCUCcGCu -3'
miRNA:   3'- cgCGCAuuUACGCuUGUGuCGAGaUG- -5'
6267 3' -48.2 NC_001844.1 + 106254 0.67 0.998474
Target:  5'- aGCGCGU-GGUGCGcAGCAauaaaAGCU-UGCa -3'
miRNA:   3'- -CGCGCAuUUACGC-UUGUg----UCGAgAUG- -5'
6267 3' -48.2 NC_001844.1 + 77466 0.68 0.993035
Target:  5'- -aGCGUGcGGUGUGAugACAcCUCUAUa -3'
miRNA:   3'- cgCGCAU-UUACGCUugUGUcGAGAUG- -5'
6267 3' -48.2 NC_001844.1 + 54142 0.69 0.987866
Target:  5'- -aGUGUGGAUGUaacAACGCGGCUCUu- -3'
miRNA:   3'- cgCGCAUUUACGc--UUGUGUCGAGAug -5'
6267 3' -48.2 NC_001844.1 + 106025 0.69 0.986022
Target:  5'- cGCGCaagccaaGUGAGUGUuucGGCGCAGCUCUu- -3'
miRNA:   3'- -CGCG-------CAUUUACGc--UUGUGUCGAGAug -5'
6267 3' -48.2 NC_001844.1 + 115834 0.7 0.977724
Target:  5'- cGgGCGUAc--GCGGACAUGGC-CUACc -3'
miRNA:   3'- -CgCGCAUuuaCGCUUGUGUCGaGAUG- -5'
6267 3' -48.2 NC_001844.1 + 83711 0.7 0.975107
Target:  5'- aGCGCGUAAagGCGcACACAaacgCUACu -3'
miRNA:   3'- -CGCGCAUUuaCGCuUGUGUcga-GAUG- -5'
6267 3' -48.2 NC_001844.1 + 132186 0.71 0.972273
Target:  5'- aGCG-GUAGAuucUGCGGcuuGCGCAGCUCa-- -3'
miRNA:   3'- -CGCgCAUUU---ACGCU---UGUGUCGAGaug -5'
6267 3' -48.2 NC_001844.1 + 122516 0.72 0.942383
Target:  5'- cGCGCGUAuuUcagugacgcgaacccGCGGACGCGGCcaucgccUCUACc -3'
miRNA:   3'- -CGCGCAUuuA---------------CGCUUGUGUCG-------AGAUG- -5'
6267 3' -48.2 NC_001844.1 + 119033 0.73 0.935822
Target:  5'- aGCGCuUAAccGCuuACACGGUUCUACg -3'
miRNA:   3'- -CGCGcAUUuaCGcuUGUGUCGAGAUG- -5'
6267 3' -48.2 NC_001844.1 + 142771 0.74 0.906328
Target:  5'- cGCGCGgacc-GCGAgGCGCAGCUCg-- -3'
miRNA:   3'- -CGCGCauuuaCGCU-UGUGUCGAGaug -5'
6267 3' -48.2 NC_001844.1 + 26382 0.75 0.836945
Target:  5'- aGCGCGUAGAgcUGUGuucGCAUuuacgcgcuGGCUCUACa -3'
miRNA:   3'- -CGCGCAUUU--ACGCu--UGUG---------UCGAGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.