miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6268 3' -43.8 NC_001844.1 + 68869 0.66 1
Target:  5'- gCAAACCCccUUGccuGGGUgGCAUcCCu -3'
miRNA:   3'- aGUUUGGGa-AAUuu-CCCAaCGUAuGG- -5'
6268 3' -43.8 NC_001844.1 + 74404 0.66 1
Target:  5'- cUUAAGCCg---AAAGGGg-GCAUACUa -3'
miRNA:   3'- -AGUUUGGgaaaUUUCCCaaCGUAUGG- -5'
6268 3' -43.8 NC_001844.1 + 80987 0.67 0.999998
Target:  5'- cUCcu-CCCUcu--GGGGUUGCAgggucGCCu -3'
miRNA:   3'- -AGuuuGGGAaauuUCCCAACGUa----UGG- -5'
6268 3' -43.8 NC_001844.1 + 47210 0.67 0.999998
Target:  5'- cCGAGCCagcguAAGGGUgcgGUGUGCUc -3'
miRNA:   3'- aGUUUGGgaaauUUCCCAa--CGUAUGG- -5'
6268 3' -43.8 NC_001844.1 + 63773 0.67 0.999998
Target:  5'- gCGAGCCCcccaauGGGUUGUuuauaaaugaggcuAUACCc -3'
miRNA:   3'- aGUUUGGGaaauuuCCCAACG--------------UAUGG- -5'
6268 3' -43.8 NC_001844.1 + 134687 0.69 0.999945
Target:  5'- --uAACCCUUUAGuguuGGGUuuagcgcuUGCAUAUa -3'
miRNA:   3'- aguUUGGGAAAUUu---CCCA--------ACGUAUGg -5'
6268 3' -43.8 NC_001844.1 + 70716 0.69 0.999926
Target:  5'- uUCAGacGCCCaucuccgcgUUAAAGG--UGCGUGCCg -3'
miRNA:   3'- -AGUU--UGGGa--------AAUUUCCcaACGUAUGG- -5'
6268 3' -43.8 NC_001844.1 + 107988 0.71 0.999539
Target:  5'- -gAAGCCaUUUUGu-GGGUUGaCAUACCa -3'
miRNA:   3'- agUUUGG-GAAAUuuCCCAAC-GUAUGG- -5'
6268 3' -43.8 NC_001844.1 + 29150 0.73 0.997079
Target:  5'- --cAACCCUUUAAAGGGUUugaagacaGCAagUACa -3'
miRNA:   3'- aguUUGGGAAAUUUCCCAA--------CGU--AUGg -5'
6268 3' -43.8 NC_001844.1 + 23953 0.73 0.996519
Target:  5'- cUCAAACUCUccgAGAGGGUgGCuUGCUa -3'
miRNA:   3'- -AGUUUGGGAaa-UUUCCCAaCGuAUGG- -5'
6268 3' -43.8 NC_001844.1 + 23832 0.79 0.909994
Target:  5'- cCGGAUCCca-GAAGGGcUGCAUGCCa -3'
miRNA:   3'- aGUUUGGGaaaUUUCCCaACGUAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.