miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6269 5' -52.6 NC_001844.1 + 113593 0.66 0.976141
Target:  5'- gCAGCCcaGAgC-CACCGCgcgGCCAACc -3'
miRNA:   3'- gGUCGG--UUgGaGUGGCGau-UGGUUGu -5'
6269 5' -52.6 NC_001844.1 + 114381 0.66 0.976141
Target:  5'- gCCAGCgGACCgcucCGCCGCcgGGCUg--- -3'
miRNA:   3'- -GGUCGgUUGGa---GUGGCGa-UUGGuugu -5'
6269 5' -52.6 NC_001844.1 + 113540 0.66 0.973491
Target:  5'- cCCGGUguACCUCGCCuGCgga-CGGCGc -3'
miRNA:   3'- -GGUCGguUGGAGUGG-CGauugGUUGU- -5'
6269 5' -52.6 NC_001844.1 + 135346 0.67 0.948783
Target:  5'- aCAGCCGuuaUCAUCGCUAAUCAcugaggccGCAg -3'
miRNA:   3'- gGUCGGUuggAGUGGCGAUUGGU--------UGU- -5'
6269 5' -52.6 NC_001844.1 + 58408 0.67 0.948783
Target:  5'- uCC-GCCAGCCUCACaGgUAAacCCAACu -3'
miRNA:   3'- -GGuCGGUUGGAGUGgCgAUU--GGUUGu -5'
6269 5' -52.6 NC_001844.1 + 22795 0.68 0.944307
Target:  5'- -gGGCCAGCCguuugGCCGC-AACCcACAu -3'
miRNA:   3'- ggUCGGUUGGag---UGGCGaUUGGuUGU- -5'
6269 5' -52.6 NC_001844.1 + 35413 0.68 0.939583
Target:  5'- aCCAGCCuuuauggcgaGACCacUCugCGCUcuGGCUAGCu -3'
miRNA:   3'- -GGUCGG----------UUGG--AGugGCGA--UUGGUUGu -5'
6269 5' -52.6 NC_001844.1 + 121552 0.68 0.934608
Target:  5'- aCAGCC--CCUCACCGCcu-CC-GCAg -3'
miRNA:   3'- gGUCGGuuGGAGUGGCGauuGGuUGU- -5'
6269 5' -52.6 NC_001844.1 + 82325 0.69 0.905955
Target:  5'- aCCAG-CGACCUCGCCacuccGUUGACC-GCGu -3'
miRNA:   3'- -GGUCgGUUGGAGUGG-----CGAUUGGuUGU- -5'
6269 5' -52.6 NC_001844.1 + 105893 0.69 0.905955
Target:  5'- aCAGCCGAgCU-GCCGCUAagcuuGCCGccGCAa -3'
miRNA:   3'- gGUCGGUUgGAgUGGCGAU-----UGGU--UGU- -5'
6269 5' -52.6 NC_001844.1 + 144111 0.69 0.898813
Target:  5'- -gGGCCAGuCCUCuagggagACCGCgu-CCAGCAc -3'
miRNA:   3'- ggUCGGUU-GGAG-------UGGCGauuGGUUGU- -5'
6269 5' -52.6 NC_001844.1 + 137159 0.7 0.878576
Target:  5'- cCCGGCCAaaaGCgCUCGCCGgUGAUUAAa- -3'
miRNA:   3'- -GGUCGGU---UG-GAGUGGCgAUUGGUUgu -5'
6269 5' -52.6 NC_001844.1 + 117383 0.7 0.87114
Target:  5'- -aGGaCAACCUCAuCCGCgcaGCCAGCGc -3'
miRNA:   3'- ggUCgGUUGGAGU-GGCGau-UGGUUGU- -5'
6269 5' -52.6 NC_001844.1 + 101419 0.7 0.855593
Target:  5'- gCCAGCgAGCCggauggCACCGCcAGCUuuGCAa -3'
miRNA:   3'- -GGUCGgUUGGa-----GUGGCGaUUGGu-UGU- -5'
6269 5' -52.6 NC_001844.1 + 73759 0.7 0.855593
Target:  5'- gCAGCagcCCUCGCCGC---CCAGCAg -3'
miRNA:   3'- gGUCGguuGGAGUGGCGauuGGUUGU- -5'
6269 5' -52.6 NC_001844.1 + 73670 0.7 0.855593
Target:  5'- gCAGCagcCCUCGCCGC---CCAGCAg -3'
miRNA:   3'- gGUCGguuGGAGUGGCGauuGGUUGU- -5'
6269 5' -52.6 NC_001844.1 + 4541 0.7 0.855593
Target:  5'- gCAGcCCAACuCUCGCagaGCUAugCGACc -3'
miRNA:   3'- gGUC-GGUUG-GAGUGg--CGAUugGUUGu -5'
6269 5' -52.6 NC_001844.1 + 57671 0.71 0.83069
Target:  5'- gCCGGCCAcucgAgCUCuaGCCGCUu-CCGACAu -3'
miRNA:   3'- -GGUCGGU----UgGAG--UGGCGAuuGGUUGU- -5'
6269 5' -52.6 NC_001844.1 + 88969 0.71 0.821997
Target:  5'- aCUcGCCuGCUUCACCGCUGccACCGucACAg -3'
miRNA:   3'- -GGuCGGuUGGAGUGGCGAU--UGGU--UGU- -5'
6269 5' -52.6 NC_001844.1 + 39666 0.71 0.813122
Target:  5'- cCCAGCCAGCuCUCGcuCCGCUGuAgUAACu -3'
miRNA:   3'- -GGUCGGUUG-GAGU--GGCGAU-UgGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.