miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6271 5' -58.7 NC_001844.1 + 144583 0.66 0.765719
Target:  5'- cGGCCCcGGCUccgcgccguccGCAGGCGagguacacCGgGCGCAGc -3'
miRNA:   3'- -UCGGGaCCGA-----------CGUUUGC--------GUgCGCGUC- -5'
6271 5' -58.7 NC_001844.1 + 16763 0.66 0.765719
Target:  5'- uAGCCUgGGCUgGCAGAguggGCGCGUGCc- -3'
miRNA:   3'- -UCGGGaCCGA-CGUUUg---CGUGCGCGuc -5'
6271 5' -58.7 NC_001844.1 + 140420 0.66 0.746584
Target:  5'- aAGCUC-GGCcggGCAGACGCAgGCcgaguaugcccGCAGa -3'
miRNA:   3'- -UCGGGaCCGa--CGUUUGCGUgCG-----------CGUC- -5'
6271 5' -58.7 NC_001844.1 + 114455 0.66 0.739789
Target:  5'- aGGCCCUGGCUaccaucGCAGcccgcugcaacggGCcuccggccagggaggGCGCGCGCu- -3'
miRNA:   3'- -UCGGGACCGA------CGUU-------------UG---------------CGUGCGCGuc -5'
6271 5' -58.7 NC_001844.1 + 115344 0.66 0.727048
Target:  5'- gGGCCCcgacGaGCUGCGccuCGCGgucCGCGCGGu -3'
miRNA:   3'- -UCGGGa---C-CGACGUuu-GCGU---GCGCGUC- -5'
6271 5' -58.7 NC_001844.1 + 78238 0.66 0.727048
Target:  5'- uGCCCUGuaa-UAAGCGCugGCGCAc -3'
miRNA:   3'- uCGGGACcgacGUUUGCGugCGCGUc -5'
6271 5' -58.7 NC_001844.1 + 6240 0.67 0.707185
Target:  5'- uGCCCU-GCUGCuaugugAAGCGUcucUGCGCAGg -3'
miRNA:   3'- uCGGGAcCGACG------UUUGCGu--GCGCGUC- -5'
6271 5' -58.7 NC_001844.1 + 24285 0.67 0.697154
Target:  5'- cGGCgUUGGCUuaAAGCG-GCGCGCAu -3'
miRNA:   3'- -UCGgGACCGAcgUUUGCgUGCGCGUc -5'
6271 5' -58.7 NC_001844.1 + 143560 0.68 0.646357
Target:  5'- gAGCUCUGGgggacaGUAAGCaGCGCGgGCAGa -3'
miRNA:   3'- -UCGGGACCga----CGUUUG-CGUGCgCGUC- -5'
6271 5' -58.7 NC_001844.1 + 143632 0.68 0.646357
Target:  5'- gGGCCUgggGGUcgaagGUAAGCGCGgGgCGCAGg -3'
miRNA:   3'- -UCGGGa--CCGa----CGUUUGCGUgC-GCGUC- -5'
6271 5' -58.7 NC_001844.1 + 142586 0.68 0.63613
Target:  5'- aAGCCCggGGaCaGCGGACGCucCGcCGCGGa -3'
miRNA:   3'- -UCGGGa-CC-GaCGUUUGCGu-GC-GCGUC- -5'
6271 5' -58.7 NC_001844.1 + 63425 0.68 0.615675
Target:  5'- cAGUCgggGGCacuuUGCGAACGUACGUGUAGu -3'
miRNA:   3'- -UCGGga-CCG----ACGUUUGCGUGCGCGUC- -5'
6271 5' -58.7 NC_001844.1 + 143664 0.68 0.615675
Target:  5'- aGGCCCguugcagcgGGCUGCGAugGUA-GC-CAGg -3'
miRNA:   3'- -UCGGGa--------CCGACGUUugCGUgCGcGUC- -5'
6271 5' -58.7 NC_001844.1 + 35386 0.72 0.430948
Target:  5'- cGCUCUGGCUaGCuguguGugGCGCGUaaGCAGa -3'
miRNA:   3'- uCGGGACCGA-CGu----UugCGUGCG--CGUC- -5'
6271 5' -58.7 NC_001844.1 + 68429 0.75 0.289482
Target:  5'- cGCCCUGGCaGCccuggaAGACGC-CGCGCGu -3'
miRNA:   3'- uCGGGACCGaCG------UUUGCGuGCGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.