miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6272 3' -52.2 NC_001844.1 + 81329 0.66 0.985368
Target:  5'- uCUuCCACCaagUCUGAcgaUCC-AugGGGGCg -3'
miRNA:   3'- -GAuGGUGGa--GGACU---AGGuUugCUCCG- -5'
6272 3' -52.2 NC_001844.1 + 142448 0.66 0.985368
Target:  5'- -gGCCGCCgUCUUGcgCCGuggccCGAGGg -3'
miRNA:   3'- gaUGGUGG-AGGACuaGGUuu---GCUCCg -5'
6272 3' -52.2 NC_001844.1 + 49400 0.66 0.983326
Target:  5'- -cGCCugauuuugGCgCUCCUGGUCUAAugGAuguaguuGGCu -3'
miRNA:   3'- gaUGG--------UG-GAGGACUAGGUUugCU-------CCG- -5'
6272 3' -52.2 NC_001844.1 + 105183 0.66 0.981501
Target:  5'- -gACCGCCaUCCUGAUCUu----GGGUa -3'
miRNA:   3'- gaUGGUGG-AGGACUAGGuuugcUCCG- -5'
6272 3' -52.2 NC_001844.1 + 115358 0.66 0.981501
Target:  5'- cCUAuCCACCgCCUGggCCccGACGAGcuGCg -3'
miRNA:   3'- -GAU-GGUGGaGGACuaGGu-UUGCUC--CG- -5'
6272 3' -52.2 NC_001844.1 + 89429 0.67 0.97096
Target:  5'- aUGCCACCcagccauUCCUGAcuggccgggCCAGAuauugucuugccgUGAGGCg -3'
miRNA:   3'- gAUGGUGG-------AGGACUa--------GGUUU-------------GCUCCG- -5'
6272 3' -52.2 NC_001844.1 + 142867 0.67 0.965326
Target:  5'- -cACgGCCUgggugaUGGUCCAGGCcGAGGCc -3'
miRNA:   3'- gaUGgUGGAgg----ACUAGGUUUG-CUCCG- -5'
6272 3' -52.2 NC_001844.1 + 48880 0.67 0.965326
Target:  5'- -cACCGCUUCUa----CAAACGGGGCg -3'
miRNA:   3'- gaUGGUGGAGGacuagGUUUGCUCCG- -5'
6272 3' -52.2 NC_001844.1 + 116090 0.67 0.961884
Target:  5'- -gGCCAUgUCUUGGcugcaaaacUCCAAgcucgGCGGGGCc -3'
miRNA:   3'- gaUGGUGgAGGACU---------AGGUU-----UGCUCCG- -5'
6272 3' -52.2 NC_001844.1 + 72244 0.68 0.958212
Target:  5'- -aGCCACCUCgaaUUGGUCCAuagcuacgucCGAGGa -3'
miRNA:   3'- gaUGGUGGAG---GACUAGGUuu--------GCUCCg -5'
6272 3' -52.2 NC_001844.1 + 90048 0.68 0.954305
Target:  5'- uUACCACCUUUaacGUCCAAAUGgguuAGGCc -3'
miRNA:   3'- gAUGGUGGAGGac-UAGGUUUGC----UCCG- -5'
6272 3' -52.2 NC_001844.1 + 54083 0.68 0.936244
Target:  5'- gUACCGCCUCCggcccgGAaCCAAcgGAGaGCg -3'
miRNA:   3'- gAUGGUGGAGGa-----CUaGGUUugCUC-CG- -5'
6272 3' -52.2 NC_001844.1 + 144909 0.72 0.82503
Target:  5'- aUACCACCUCU--AUCuUGAugGGGGCg -3'
miRNA:   3'- gAUGGUGGAGGacUAG-GUUugCUCCG- -5'
6272 3' -52.2 NC_001844.1 + 80059 0.72 0.81623
Target:  5'- -gACCACCUCCUGAagaagAAGCaGGGCg -3'
miRNA:   3'- gaUGGUGGAGGACUagg--UUUGcUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.