Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6277 | 3' | -55.2 | NC_001844.1 | + | 41783 | 0.67 | 0.870091 |
Target: 5'- uAGGC-UCGCGgguCAUAGcgGGGCGCa -3' miRNA: 3'- -UUCGuAGCGCgguGUGUCuaCCUGCG- -5' |
|||||||
6277 | 3' | -55.2 | NC_001844.1 | + | 122622 | 0.68 | 0.803386 |
Target: 5'- cGGCAggCGCgGCgACACAGGcgGcGACGCg -3' miRNA: 3'- uUCGUa-GCG-CGgUGUGUCUa-C-CUGCG- -5' |
|||||||
6277 | 3' | -55.2 | NC_001844.1 | + | 139898 | 0.69 | 0.785868 |
Target: 5'- -cGCGUCGCaccaacaggagguaGCCgaGCACaucucauaugcauaaAGAUGGACGCc -3' miRNA: 3'- uuCGUAGCG--------------CGG--UGUG---------------UCUACCUGCG- -5' |
|||||||
6277 | 3' | -55.2 | NC_001844.1 | + | 136464 | 0.7 | 0.736461 |
Target: 5'- cAGCGgugCGCGCUAugucCGCGGAUGccgcuGACGCg -3' miRNA: 3'- uUCGUa--GCGCGGU----GUGUCUAC-----CUGCG- -5' |
|||||||
6277 | 3' | -55.2 | NC_001844.1 | + | 144226 | 0.7 | 0.736461 |
Target: 5'- uGAGgAcCGCGCgGCugAGGUGG-CGCu -3' miRNA: 3'- -UUCgUaGCGCGgUGugUCUACCuGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home