miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6280 5' -49 NC_001844.1 + 136271 0.66 0.998586
Target:  5'- cGCCgCGCcgguggagaCCCAcgCUGAGCUcAGCACc -3'
miRNA:   3'- -CGGgGUG---------GGGUuaGAUUUGA-UUGUGu -5'
6280 5' -49 NC_001844.1 + 106468 0.66 0.99829
Target:  5'- gGCCCCAcCCCCGAcggggaaaacUCUAAcuACguuggauuUGACACc -3'
miRNA:   3'- -CGGGGU-GGGGUU----------AGAUU--UG--------AUUGUGu -5'
6280 5' -49 NC_001844.1 + 116637 0.66 0.997539
Target:  5'- gGCCCCucGCCCCGG---GAGCUcGCAUu -3'
miRNA:   3'- -CGGGG--UGGGGUUagaUUUGAuUGUGu -5'
6280 5' -49 NC_001844.1 + 145160 0.67 0.996473
Target:  5'- -aCCCGCCCa---CUAAcccgcccACUAACACAa -3'
miRNA:   3'- cgGGGUGGGguuaGAUU-------UGAUUGUGU- -5'
6280 5' -49 NC_001844.1 + 113047 0.67 0.994054
Target:  5'- aCUCCACCCCAAUCcauccccaAACGCGc -3'
miRNA:   3'- cGGGGUGGGGUUAGauuuga--UUGUGU- -5'
6280 5' -49 NC_001844.1 + 92778 0.67 0.993497
Target:  5'- cCCCCACCaCGAUUUGAauagaaACUcGCGCAg -3'
miRNA:   3'- cGGGGUGGgGUUAGAUU------UGAuUGUGU- -5'
6280 5' -49 NC_001844.1 + 2036 0.68 0.992475
Target:  5'- cCCCCACCCagaAcgCUAccGCUAACAa- -3'
miRNA:   3'- cGGGGUGGGg--UuaGAUu-UGAUUGUgu -5'
6280 5' -49 NC_001844.1 + 36744 0.68 0.991329
Target:  5'- cGCgCCAgCCCAGUC-AGACUcaggaucugugGACGCGu -3'
miRNA:   3'- -CGgGGUgGGGUUAGaUUUGA-----------UUGUGU- -5'
6280 5' -49 NC_001844.1 + 25055 0.7 0.975754
Target:  5'- aGCCCCACCugcgguguuuuuagCCAAcgUGGACgGACGCAg -3'
miRNA:   3'- -CGGGGUGG--------------GGUUagAUUUGaUUGUGU- -5'
6280 5' -49 NC_001844.1 + 65183 0.72 0.928398
Target:  5'- gGCUcaaCCACCCCAAUCUGuuAUUGcCACAc -3'
miRNA:   3'- -CGG---GGUGGGGUUAGAUu-UGAUuGUGU- -5'
6280 5' -49 NC_001844.1 + 121675 0.74 0.843171
Target:  5'- gGCCCCGCUCCucucCUGAGCgcgucAGCGCAu -3'
miRNA:   3'- -CGGGGUGGGGuua-GAUUUGa----UUGUGU- -5'
6280 5' -49 NC_001844.1 + 88760 0.75 0.816612
Target:  5'- cGCCCCACCCUAGaaUGAGCcuGCAUg -3'
miRNA:   3'- -CGGGGUGGGGUUagAUUUGauUGUGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.