miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6281	3'	-53.1	NC_001844.1	+	141811	0.66	0.973739
	Target:  5'- ----cCCGguGGUGGGG-CGUCCgACCc -3' miRNA:   3'- cgaaaGGCauCCACCCCuGUAGG-UGG- -5'
6281	3'	-53.1	NC_001844.1	+	24337	0.66	0.973739
	Target:  5'- aGCag-CCGUgcaAGGUGGGGuuuuccCAUUCugCu -3' miRNA:   3'- -CGaaaGGCA---UCCACCCCu-----GUAGGugG- -5'
6281	3'	-53.1	NC_001844.1	+	37117	0.67	0.964723
	Target:  5'- aGgUUUUCGcuacuGGUGGGGGgaGUCCACg -3' miRNA:   3'- -CgAAAGGCau---CCACCCCUg-UAGGUGg -5'
6281	3'	-53.1	NC_001844.1	+	23423	0.68	0.935295
	Target:  5'- uGCUaUUauuaGUGGGUGuuugcuaGGGGCuUCCGCCa -3' miRNA:   3'- -CGAaAGg---CAUCCAC-------CCCUGuAGGUGG- -5'
6281	3'	-53.1	NC_001844.1	+	106626	0.68	0.919783
	Target:  5'- uGCUga--GUGGGUGGGGAUggCCGg- -3' miRNA:   3'- -CGAaaggCAUCCACCCCUGuaGGUgg -5'
6281	3'	-53.1	NC_001844.1	+	120230	0.7	0.87397
	Target:  5'- cGCUggCUGgAGcGUGGGGAUGgguucCCACCa -3' miRNA:   3'- -CGAaaGGCaUC-CACCCCUGUa----GGUGG- -5'
6281	3'	-53.1	NC_001844.1	+	77706	0.7	0.858817
	Target:  5'- gGCUgaUCCacUGGGUGGGGAcCAUCCcgaGCUa -3' miRNA:   3'- -CGAa-AGGc-AUCCACCCCU-GUAGG---UGG- -5'
6281	3'	-53.1	NC_001844.1	+	121578	0.71	0.834528
	Target:  5'- cGCggccgugUCCGUGcuGGUGGGGuACAgccccucaCCGCCu -3' miRNA:   3'- -CGaa-----AGGCAU--CCACCCC-UGUa-------GGUGG- -5'
6281	3'	-53.1	NC_001844.1	+	41521	0.75	0.620014
	Target:  5'- gGC-UUCC--AGGUGGGGGCggCUACCg -3' miRNA:   3'- -CGaAAGGcaUCCACCCCUGuaGGUGG- -5'
6281	3'	-53.1	NC_001844.1	+	120892	0.76	0.564386
	Target:  5'- cGCUUUUgagcagcgcgggcaCGUGuggugggaggguuGGUGGGGACAUCUGCCu -3' miRNA:   3'- -CGAAAG--------------GCAU-------------CCACCCCUGUAGGUGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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