miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6282 3' -55.3 NC_001844.1 + 73806 0.66 0.928865
Target:  5'- cCCUCGCCGccgcagCAGCCcucgccgccgcaGCAGCCcucgCCg -3'
miRNA:   3'- uGGAGCGGUcaa---GUUGG------------UGUCGGa---GG- -5'
6282 3' -55.3 NC_001844.1 + 73860 0.66 0.928865
Target:  5'- cCCUCGCCGccgcagCAGCCcucgccgccgcaGCAGCCcucgCCg -3'
miRNA:   3'- uGGAGCGGUcaa---GUUGG------------UGUCGGa---GG- -5'
6282 3' -55.3 NC_001844.1 + 88616 0.66 0.928865
Target:  5'- cACgUUGgUAGgcuucuucCAACUGCAGCCUCCu -3'
miRNA:   3'- -UGgAGCgGUCaa------GUUGGUGUCGGAGG- -5'
6282 3' -55.3 NC_001844.1 + 22433 0.66 0.923458
Target:  5'- uGCUagCGCCAGUcCAGCCACA-CCaaCCa -3'
miRNA:   3'- -UGGa-GCGGUCAaGUUGGUGUcGGa-GG- -5'
6282 3' -55.3 NC_001844.1 + 73663 0.66 0.905778
Target:  5'- cCCUCGCCGcccagCAGCCcucgccgccgcaGCAGCCcucgCCg -3'
miRNA:   3'- uGGAGCGGUcaa--GUUGG------------UGUCGGa---GG- -5'
6282 3' -55.3 NC_001844.1 + 73752 0.66 0.905778
Target:  5'- cCCUCGCCGcccagCAGCCcucgccgccgcaGCAGCCcucgCCg -3'
miRNA:   3'- uGGAGCGGUcaa--GUUGG------------UGUCGGa---GG- -5'
6282 3' -55.3 NC_001844.1 + 35287 0.66 0.905778
Target:  5'- gGCCUCugugGCCAGU---GCCAU-GUCUCCu -3'
miRNA:   3'- -UGGAG----CGGUCAaguUGGUGuCGGAGG- -5'
6282 3' -55.3 NC_001844.1 + 113533 0.66 0.899404
Target:  5'- uACCUCGCCugcGgaCGGCgCGgAGCCggggCCg -3'
miRNA:   3'- -UGGAGCGGu--CaaGUUG-GUgUCGGa---GG- -5'
6282 3' -55.3 NC_001844.1 + 137703 0.67 0.885948
Target:  5'- cGCCUCGCCGGggacgUCAAUCGCuuGUUUa- -3'
miRNA:   3'- -UGGAGCGGUCa----AGUUGGUGu-CGGAgg -5'
6282 3' -55.3 NC_001844.1 + 121409 0.67 0.863296
Target:  5'- uCCUCGgCGGggCGgggaaucgcauguGCCAUAGCC-CCg -3'
miRNA:   3'- uGGAGCgGUCaaGU-------------UGGUGUCGGaGG- -5'
6282 3' -55.3 NC_001844.1 + 114897 0.68 0.840254
Target:  5'- uGCCUC-CCAGgcuauccUCGGCCAggagaugcCGGUCUCCu -3'
miRNA:   3'- -UGGAGcGGUCa------AGUUGGU--------GUCGGAGG- -5'
6282 3' -55.3 NC_001844.1 + 78291 0.68 0.837775
Target:  5'- cAUCUCGCCAuacguuaccggaacGUccgCGGCCAUAuCCUCCa -3'
miRNA:   3'- -UGGAGCGGU--------------CAa--GUUGGUGUcGGAGG- -5'
6282 3' -55.3 NC_001844.1 + 40595 0.68 0.823407
Target:  5'- gUCUUGCCGuauuGUUgCuGCUAUAGCCUCCu -3'
miRNA:   3'- uGGAGCGGU----CAA-GuUGGUGUCGGAGG- -5'
6282 3' -55.3 NC_001844.1 + 136271 0.69 0.800455
Target:  5'- cGCCgCGCCGGUggaGAcCCACGcugagcucagcacccGCCUCCu -3'
miRNA:   3'- -UGGaGCGGUCAag-UU-GGUGU---------------CGGAGG- -5'
6282 3' -55.3 NC_001844.1 + 82319 0.69 0.759306
Target:  5'- gACCUCGCCAcuccgUUGACCGC-GUCUCg -3'
miRNA:   3'- -UGGAGCGGUca---AGUUGGUGuCGGAGg -5'
6282 3' -55.3 NC_001844.1 + 122439 0.7 0.739819
Target:  5'- cACC-CGCCAGUcaauaaaaccUCAuaguagagaACCcCAGCCUCUg -3'
miRNA:   3'- -UGGaGCGGUCA----------AGU---------UGGuGUCGGAGG- -5'
6282 3' -55.3 NC_001844.1 + 135082 0.72 0.617459
Target:  5'- uACCUCcUCAGcggCAGCCACcGCCUCUg -3'
miRNA:   3'- -UGGAGcGGUCaa-GUUGGUGuCGGAGG- -5'
6282 3' -55.3 NC_001844.1 + 111252 0.73 0.539802
Target:  5'- -aCUCGCCAGUUUuggccgauguuuuugGACgaCACAGCUUCCu -3'
miRNA:   3'- ugGAGCGGUCAAG---------------UUG--GUGUCGGAGG- -5'
6282 3' -55.3 NC_001844.1 + 84225 0.81 0.220675
Target:  5'- aGCCUCGCCGGcUCAAUCcCAGCCUUUu -3'
miRNA:   3'- -UGGAGCGGUCaAGUUGGuGUCGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.