miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6283 3' -50.1 NC_001844.1 + 49048 0.66 0.996017
Target:  5'- -cUCAAAUGCGGuaaccaCCGUggcUACUGcacACGGUg -3'
miRNA:   3'- caAGUUUGCGCC------GGUA---AUGAC---UGCCG- -5'
6283 3' -50.1 NC_001844.1 + 92200 0.66 0.993586
Target:  5'- --gCGAugGCGGCCAauaaacgUUACcaaaaACGGCc -3'
miRNA:   3'- caaGUUugCGCCGGU-------AAUGac---UGCCG- -5'
6283 3' -50.1 NC_001844.1 + 26342 0.67 0.991586
Target:  5'- --aCAAAcCGUGGCCGUUucAUUGGguUGGCa -3'
miRNA:   3'- caaGUUU-GCGCCGGUAA--UGACU--GCCG- -5'
6283 3' -50.1 NC_001844.1 + 121437 0.67 0.990351
Target:  5'- --cCGGGCGCGGCCGggUACcagGGguauuuccuCGGCg -3'
miRNA:   3'- caaGUUUGCGCCGGUa-AUGa--CU---------GCCG- -5'
6283 3' -50.1 NC_001844.1 + 689 0.67 0.988978
Target:  5'- -cUCGAucGCGUGGCCucca-UGugGGUg -3'
miRNA:   3'- caAGUU--UGCGCCGGuaaugACugCCG- -5'
6283 3' -50.1 NC_001844.1 + 18616 0.67 0.987457
Target:  5'- -aUCAGAgCGuCGGCCGUUGCUGuuGa- -3'
miRNA:   3'- caAGUUU-GC-GCCGGUAAUGACugCcg -5'
6283 3' -50.1 NC_001844.1 + 32800 0.68 0.98578
Target:  5'- --cCGAACGC-GCCAccACUcGACGGUg -3'
miRNA:   3'- caaGUUUGCGcCGGUaaUGA-CUGCCG- -5'
6283 3' -50.1 NC_001844.1 + 40790 0.68 0.981917
Target:  5'- -gUCAAggGCgGCGGCCAcgcUUugUGGgGGUg -3'
miRNA:   3'- caAGUU--UG-CGCCGGU---AAugACUgCCG- -5'
6283 3' -50.1 NC_001844.1 + 121583 0.69 0.974714
Target:  5'- --gCGuGCGCGGCCGUguccgUGCUGGUGGg -3'
miRNA:   3'- caaGUuUGCGCCGGUA-----AUGACUGCCg -5'
6283 3' -50.1 NC_001844.1 + 89760 0.69 0.968874
Target:  5'- uGUUCAAAacaagaGCGGCUAgaagACgucuUGAUGGCu -3'
miRNA:   3'- -CAAGUUUg-----CGCCGGUaa--UG----ACUGCCG- -5'
6283 3' -50.1 NC_001844.1 + 103242 0.7 0.959925
Target:  5'- -gUCAAAgGCGGCgGUuuuuacaaacguauaUGCUGGCaGCg -3'
miRNA:   3'- caAGUUUgCGCCGgUA---------------AUGACUGcCG- -5'
6283 3' -50.1 NC_001844.1 + 144147 0.7 0.954436
Target:  5'- --gUAGAUGUGGUacugGCUGAUGGCg -3'
miRNA:   3'- caaGUUUGCGCCGguaaUGACUGCCG- -5'
6283 3' -50.1 NC_001844.1 + 122620 0.71 0.930792
Target:  5'- --gCAGGCGCGGCgAc-ACaGGCGGCg -3'
miRNA:   3'- caaGUUUGCGCCGgUaaUGaCUGCCG- -5'
6283 3' -50.1 NC_001844.1 + 97096 0.72 0.893861
Target:  5'- -cUCAGAUGCGGCgGgu-UUGAUGGUa -3'
miRNA:   3'- caAGUUUGCGCCGgUaauGACUGCCG- -5'
6283 3' -50.1 NC_001844.1 + 10574 0.75 0.765432
Target:  5'- uUUCGAGgGCcaguaagucauGuGCCAUUACUGAUGGCu -3'
miRNA:   3'- cAAGUUUgCG-----------C-CGGUAAUGACUGCCG- -5'
6283 3' -50.1 NC_001844.1 + 85542 0.78 0.608343
Target:  5'- -aUCAAACGCGGCC---ACaGGCGGUg -3'
miRNA:   3'- caAGUUUGCGCCGGuaaUGaCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.