miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6284 5' -49.4 NC_001844.1 + 67455 0.66 0.99799
Target:  5'- --gAAUGCUAGagggGCgauaGGGGgUGACGCa -3'
miRNA:   3'- cgaUUGCGAUUg---CGa---UCCCgAUUGCG- -5'
6284 5' -49.4 NC_001844.1 + 81091 0.66 0.99799
Target:  5'- gGUUAACGgUAGCacgGUUGGGGUaAGCGg -3'
miRNA:   3'- -CGAUUGCgAUUG---CGAUCCCGaUUGCg -5'
6284 5' -49.4 NC_001844.1 + 119388 0.66 0.997597
Target:  5'- aCUcuCGCcauACGCUGGGGU--GCGUu -3'
miRNA:   3'- cGAuuGCGau-UGCGAUCCCGauUGCG- -5'
6284 5' -49.4 NC_001844.1 + 69703 0.66 0.997597
Target:  5'- cGCUGGCGCUucguggaGCUucucccguGGGU--ACGCa -3'
miRNA:   3'- -CGAUUGCGAuug----CGAu-------CCCGauUGCG- -5'
6284 5' -49.4 NC_001844.1 + 136215 0.66 0.997597
Target:  5'- aCUggUGCU-GC-CUGGGGC--ACGCg -3'
miRNA:   3'- cGAuuGCGAuUGcGAUCCCGauUGCG- -5'
6284 5' -49.4 NC_001844.1 + 6910 0.66 0.99714
Target:  5'- uGCUGACGCUcACGgUAGa-CUuuGCGCa -3'
miRNA:   3'- -CGAUUGCGAuUGCgAUCccGAu-UGCG- -5'
6284 5' -49.4 NC_001844.1 + 28062 0.67 0.996012
Target:  5'- --cAGCGC--GCGCUAGGuaUGuCGCa -3'
miRNA:   3'- cgaUUGCGauUGCGAUCCcgAUuGCG- -5'
6284 5' -49.4 NC_001844.1 + 3924 0.67 0.99561
Target:  5'- uGCUAcagcaGCGaCUGcaaGCUGGGGCUAcugguggacaucacaACGUg -3'
miRNA:   3'- -CGAU-----UGC-GAUug-CGAUCCCGAU---------------UGCG- -5'
6284 5' -49.4 NC_001844.1 + 94769 0.67 0.995324
Target:  5'- cGCUGcgcucaccgcGCGCaGAUGCUAGGaaguccacuaGCU-GCGCg -3'
miRNA:   3'- -CGAU----------UGCGaUUGCGAUCC----------CGAuUGCG- -5'
6284 5' -49.4 NC_001844.1 + 144517 0.67 0.995324
Target:  5'- gGUUGGcCGCgcgGugGCUcuGGGCU-GCGCc -3'
miRNA:   3'- -CGAUU-GCGa--UugCGAu-CCCGAuUGCG- -5'
6284 5' -49.4 NC_001844.1 + 141627 0.67 0.993658
Target:  5'- gGC-AGCGCUuGCGCUuAGaGGCccggccAACGCa -3'
miRNA:   3'- -CGaUUGCGAuUGCGA-UC-CCGa-----UUGCG- -5'
6284 5' -49.4 NC_001844.1 + 47373 0.67 0.993658
Target:  5'- uCUAACGCguuUGCUucagagAGGGUUAAgCGCc -3'
miRNA:   3'- cGAUUGCGauuGCGA------UCCCGAUU-GCG- -5'
6284 5' -49.4 NC_001844.1 + 76998 0.67 0.992663
Target:  5'- aCUcuCGCUcGGCGUUGGGuGCUAGCa- -3'
miRNA:   3'- cGAuuGCGA-UUGCGAUCC-CGAUUGcg -5'
6284 5' -49.4 NC_001844.1 + 31875 0.68 0.9903
Target:  5'- gGCcGAUGC---CGUUAGGGCUcACGUg -3'
miRNA:   3'- -CGaUUGCGauuGCGAUCCCGAuUGCG- -5'
6284 5' -49.4 NC_001844.1 + 144214 0.68 0.9903
Target:  5'- gGCUGAgG-UGGCGCUcccGGGGCcAGCGa -3'
miRNA:   3'- -CGAUUgCgAUUGCGA---UCCCGaUUGCg -5'
6284 5' -49.4 NC_001844.1 + 129566 0.68 0.990168
Target:  5'- aCUGugGCUucGcaaagauaaucgcGCGUUGGGGCaccAACGCg -3'
miRNA:   3'- cGAUugCGA--U-------------UGCGAUCCCGa--UUGCG- -5'
6284 5' -49.4 NC_001844.1 + 127864 0.68 0.986382
Target:  5'- aGCUGugGUUGAUGUUGGugauucggacaccgaGGUUGAUGUa -3'
miRNA:   3'- -CGAUugCGAUUGCGAUC---------------CCGAUUGCG- -5'
6284 5' -49.4 NC_001844.1 + 24463 0.68 0.985684
Target:  5'- aGCUuaaGCUcaaaAACGCUGGGGCcg-UGCu -3'
miRNA:   3'- -CGAuugCGA----UUGCGAUCCCGauuGCG- -5'
6284 5' -49.4 NC_001844.1 + 13472 0.69 0.983821
Target:  5'- uGgUAGCGCcaAACGCUuuuGGGCUGG-GCu -3'
miRNA:   3'- -CgAUUGCGa-UUGCGAu--CCCGAUUgCG- -5'
6284 5' -49.4 NC_001844.1 + 65006 0.69 0.98178
Target:  5'- aGCUAGCaGCcaAACGgUAGacGCUAGCGCg -3'
miRNA:   3'- -CGAUUG-CGa-UUGCgAUCc-CGAUUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.