miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6284 5' -49.4 NC_001844.1 + 81886 0.69 0.981132
Target:  5'- cGUUAACGUaguacGACGCgAGGGUaacacuggaaagcaUGACGCg -3'
miRNA:   3'- -CGAUUGCGa----UUGCGaUCCCG--------------AUUGCG- -5'
6284 5' -49.4 NC_001844.1 + 89324 0.73 0.899566
Target:  5'- cGCUGACGCUcuAAUGCgGGGGCaguUGUg -3'
miRNA:   3'- -CGAUUGCGA--UUGCGaUCCCGauuGCG- -5'
6284 5' -49.4 NC_001844.1 + 94769 0.67 0.995324
Target:  5'- cGCUGcgcucaccgcGCGCaGAUGCUAGGaaguccacuaGCU-GCGCg -3'
miRNA:   3'- -CGAU----------UGCGaUUGCGAUCC----------CGAuUGCG- -5'
6284 5' -49.4 NC_001844.1 + 96631 0.76 0.752951
Target:  5'- cCUGugGCcaGGCGCUAGGggcuauaucuGCUAGCGCg -3'
miRNA:   3'- cGAUugCGa-UUGCGAUCC----------CGAUUGCG- -5'
6284 5' -49.4 NC_001844.1 + 108512 0.73 0.89269
Target:  5'- cCUAGCGUUAGCGUUAGccCUAGCGUu -3'
miRNA:   3'- cGAUUGCGAUUGCGAUCccGAUUGCG- -5'
6284 5' -49.4 NC_001844.1 + 108548 0.73 0.89269
Target:  5'- cCUAGCGUUAGCGUUAGccCUAGCGUu -3'
miRNA:   3'- cGAUUGCGAUUGCGAUCccGAUUGCG- -5'
6284 5' -49.4 NC_001844.1 + 108584 0.73 0.89269
Target:  5'- cCUAGCGUUAGCGUUAGccCUAGCGUu -3'
miRNA:   3'- cGAUUGCGAUUGCGAUCccGAUUGCG- -5'
6284 5' -49.4 NC_001844.1 + 108620 0.73 0.89269
Target:  5'- cCUAGCGUUAGCGUUAGccCUAGCGUu -3'
miRNA:   3'- cGAUUGCGAUUGCGAUCccGAUUGCG- -5'
6284 5' -49.4 NC_001844.1 + 108656 0.73 0.89269
Target:  5'- cCUAGCGUUAGCGUUAGccCUAGCGUu -3'
miRNA:   3'- cGAUUGCGAUUGCGAUCccGAUUGCG- -5'
6284 5' -49.4 NC_001844.1 + 108691 0.7 0.965295
Target:  5'- cCUAGCGUUAGCGUUAGcccagcGUUAGCGUu -3'
miRNA:   3'- cGAUUGCGAUUGCGAUCc-----CGAUUGCG- -5'
6284 5' -49.4 NC_001844.1 + 108727 0.73 0.89269
Target:  5'- cCUAGCGUUAGCGUUAGccCUAGCGUu -3'
miRNA:   3'- cGAUUGCGAUUGCGAUCccGAUUGCG- -5'
6284 5' -49.4 NC_001844.1 + 108763 0.73 0.89269
Target:  5'- cCUAGCGUUAGCGUUAGccCUAGCGUu -3'
miRNA:   3'- cGAUUGCGAUUGCGAUCccGAUUGCG- -5'
6284 5' -49.4 NC_001844.1 + 108799 0.73 0.89269
Target:  5'- cCUAGCGUUAGCGUUAGccCUAGCGUu -3'
miRNA:   3'- cGAUUGCGAUUGCGAUCccGAUUGCG- -5'
6284 5' -49.4 NC_001844.1 + 119388 0.66 0.997597
Target:  5'- aCUcuCGCcauACGCUGGGGU--GCGUu -3'
miRNA:   3'- cGAuuGCGau-UGCGAUCCCGauUGCG- -5'
6284 5' -49.4 NC_001844.1 + 125730 0.71 0.945186
Target:  5'- -aUGugGCUuACGCUcuaGGCUGGCGUa -3'
miRNA:   3'- cgAUugCGAuUGCGAuc-CCGAUUGCG- -5'
6284 5' -49.4 NC_001844.1 + 127864 0.68 0.986382
Target:  5'- aGCUGugGUUGAUGUUGGugauucggacaccgaGGUUGAUGUa -3'
miRNA:   3'- -CGAUugCGAUUGCGAUC---------------CCGAUUGCG- -5'
6284 5' -49.4 NC_001844.1 + 129566 0.68 0.990168
Target:  5'- aCUGugGCUucGcaaagauaaucgcGCGUUGGGGCaccAACGCg -3'
miRNA:   3'- cGAUugCGA--U-------------UGCGAUCCCGa--UUGCG- -5'
6284 5' -49.4 NC_001844.1 + 136215 0.66 0.997597
Target:  5'- aCUggUGCU-GC-CUGGGGC--ACGCg -3'
miRNA:   3'- cGAuuGCGAuUGcGAUCCCGauUGCG- -5'
6284 5' -49.4 NC_001844.1 + 141627 0.67 0.993658
Target:  5'- gGC-AGCGCUuGCGCUuAGaGGCccggccAACGCa -3'
miRNA:   3'- -CGaUUGCGAuUGCGA-UC-CCGa-----UUGCG- -5'
6284 5' -49.4 NC_001844.1 + 144214 0.68 0.9903
Target:  5'- gGCUGAgG-UGGCGCUcccGGGGCcAGCGa -3'
miRNA:   3'- -CGAUUgCgAUUGCGA---UCCCGaUUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.