miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6285 3' -51.5 NC_001844.1 + 119384 0.66 0.981829
Target:  5'- --uCGCcauACGCUGGGGU--GCGUUAg -3'
miRNA:   3'- auuGCGau-UGCGAUCCCGauUGCGAU- -5'
6285 3' -51.5 NC_001844.1 + 64988 0.66 0.975568
Target:  5'- aGACGCUAGCGCgucuacgggccuagaUuuuGGGCgugaUGACGCg- -3'
miRNA:   3'- aUUGCGAUUGCG---------------Au--CCCG----AUUGCGau -5'
6285 3' -51.5 NC_001844.1 + 76994 0.67 0.965174
Target:  5'- --uCGCUcGGCGUUGGGuGCUAGCauGCUGa -3'
miRNA:   3'- auuGCGA-UUGCGAUCC-CGAUUG--CGAU- -5'
6285 3' -51.5 NC_001844.1 + 108690 0.67 0.961601
Target:  5'- cUAGCGUUAGCGUUAGcccagcGUUAGCGUUAg -3'
miRNA:   3'- -AUUGCGAUUGCGAUCc-----CGAUUGCGAU- -5'
6285 3' -51.5 NC_001844.1 + 125730 0.67 0.957782
Target:  5'- aUGugGCUuACGCUcuaGGCUGGCGUa- -3'
miRNA:   3'- -AUugCGAuUGCGAuc-CCGAUUGCGau -5'
6285 3' -51.5 NC_001844.1 + 96630 0.68 0.93482
Target:  5'- cUGugGCcaGGCGCUAGGggcuauaucuGCUAGCGCg- -3'
miRNA:   3'- -AUugCGa-UUGCGAUCC----------CGAUUGCGau -5'
6285 3' -51.5 NC_001844.1 + 108798 0.7 0.884241
Target:  5'- cUAGCGUUAGCGUUAGccCUAGCGUUAg -3'
miRNA:   3'- -AUUGCGAUUGCGAUCccGAUUGCGAU- -5'
6285 3' -51.5 NC_001844.1 + 108762 0.7 0.884241
Target:  5'- cUAGCGUUAGCGUUAGccCUAGCGUUAg -3'
miRNA:   3'- -AUUGCGAUUGCGAUCccGAUUGCGAU- -5'
6285 3' -51.5 NC_001844.1 + 108726 0.7 0.884241
Target:  5'- cUAGCGUUAGCGUUAGccCUAGCGUUAg -3'
miRNA:   3'- -AUUGCGAUUGCGAUCccGAUUGCGAU- -5'
6285 3' -51.5 NC_001844.1 + 108655 0.7 0.884241
Target:  5'- cUAGCGUUAGCGUUAGccCUAGCGUUAg -3'
miRNA:   3'- -AUUGCGAUUGCGAUCccGAUUGCGAU- -5'
6285 3' -51.5 NC_001844.1 + 108619 0.7 0.884241
Target:  5'- cUAGCGUUAGCGUUAGccCUAGCGUUAg -3'
miRNA:   3'- -AUUGCGAUUGCGAUCccGAUUGCGAU- -5'
6285 3' -51.5 NC_001844.1 + 108583 0.7 0.884241
Target:  5'- cUAGCGUUAGCGUUAGccCUAGCGUUAg -3'
miRNA:   3'- -AUUGCGAUUGCGAUCccGAUUGCGAU- -5'
6285 3' -51.5 NC_001844.1 + 108547 0.7 0.884241
Target:  5'- cUAGCGUUAGCGUUAGccCUAGCGUUAg -3'
miRNA:   3'- -AUUGCGAUUGCGAUCccGAUUGCGAU- -5'
6285 3' -51.5 NC_001844.1 + 108511 0.7 0.884241
Target:  5'- cUAGCGUUAGCGUUAGccCUAGCGUUAa -3'
miRNA:   3'- -AUUGCGAUUGCGAUCccGAUUGCGAU- -5'
6285 3' -51.5 NC_001844.1 + 13470 0.7 0.869009
Target:  5'- gUAGCGCcaAACGCUuuuGGGCUGG-GCUAg -3'
miRNA:   3'- -AUUGCGa-UUGCGAu--CCCGAUUgCGAU- -5'
6285 3' -51.5 NC_001844.1 + 79954 0.71 0.817808
Target:  5'- gUGGCGCggguCGCUGGGGCUggUGg-- -3'
miRNA:   3'- -AUUGCGauu-GCGAUCCCGAuuGCgau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.