Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6286 | 3' | -51.5 | NC_001844.1 | + | 79954 | 0.71 | 0.817808 |
Target: 5'- gUGGCGCggguCGCUGGGGCUggUGg-- -3' miRNA: 3'- -AUUGCGauu-GCGAUCCCGAuuGCgau -5' |
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6286 | 3' | -51.5 | NC_001844.1 | + | 13470 | 0.7 | 0.869009 |
Target: 5'- gUAGCGCcaAACGCUuuuGGGCUGG-GCUAg -3' miRNA: 3'- -AUUGCGa-UUGCGAu--CCCGAUUgCGAU- -5' |
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6286 | 3' | -51.5 | NC_001844.1 | + | 108798 | 0.7 | 0.884241 |
Target: 5'- cUAGCGUUAGCGUUAGccCUAGCGUUAg -3' miRNA: 3'- -AUUGCGAUUGCGAUCccGAUUGCGAU- -5' |
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6286 | 3' | -51.5 | NC_001844.1 | + | 108726 | 0.7 | 0.884241 |
Target: 5'- cUAGCGUUAGCGUUAGccCUAGCGUUAg -3' miRNA: 3'- -AUUGCGAUUGCGAUCccGAUUGCGAU- -5' |
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6286 | 3' | -51.5 | NC_001844.1 | + | 108762 | 0.7 | 0.884241 |
Target: 5'- cUAGCGUUAGCGUUAGccCUAGCGUUAg -3' miRNA: 3'- -AUUGCGAUUGCGAUCccGAUUGCGAU- -5' |
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6286 | 3' | -51.5 | NC_001844.1 | + | 108655 | 0.7 | 0.884241 |
Target: 5'- cUAGCGUUAGCGUUAGccCUAGCGUUAg -3' miRNA: 3'- -AUUGCGAUUGCGAUCccGAUUGCGAU- -5' |
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6286 | 3' | -51.5 | NC_001844.1 | + | 108619 | 0.7 | 0.884241 |
Target: 5'- cUAGCGUUAGCGUUAGccCUAGCGUUAg -3' miRNA: 3'- -AUUGCGAUUGCGAUCccGAUUGCGAU- -5' |
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6286 | 3' | -51.5 | NC_001844.1 | + | 108583 | 0.7 | 0.884241 |
Target: 5'- cUAGCGUUAGCGUUAGccCUAGCGUUAg -3' miRNA: 3'- -AUUGCGAUUGCGAUCccGAUUGCGAU- -5' |
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6286 | 3' | -51.5 | NC_001844.1 | + | 108547 | 0.7 | 0.884241 |
Target: 5'- cUAGCGUUAGCGUUAGccCUAGCGUUAg -3' miRNA: 3'- -AUUGCGAUUGCGAUCccGAUUGCGAU- -5' |
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6286 | 3' | -51.5 | NC_001844.1 | + | 108511 | 0.7 | 0.884241 |
Target: 5'- cUAGCGUUAGCGUUAGccCUAGCGUUAa -3' miRNA: 3'- -AUUGCGAUUGCGAUCccGAUUGCGAU- -5' |
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6286 | 3' | -51.5 | NC_001844.1 | + | 96630 | 0.68 | 0.93482 |
Target: 5'- cUGugGCcaGGCGCUAGGggcuauaucuGCUAGCGCg- -3' miRNA: 3'- -AUugCGa-UUGCGAUCC----------CGAUUGCGau -5' |
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6286 | 3' | -51.5 | NC_001844.1 | + | 125730 | 0.67 | 0.957782 |
Target: 5'- aUGugGCUuACGCUcuaGGCUGGCGUa- -3' miRNA: 3'- -AUugCGAuUGCGAuc-CCGAUUGCGau -5' |
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6286 | 3' | -51.5 | NC_001844.1 | + | 108690 | 0.67 | 0.961601 |
Target: 5'- cUAGCGUUAGCGUUAGcccagcGUUAGCGUUAg -3' miRNA: 3'- -AUUGCGAUUGCGAUCc-----CGAUUGCGAU- -5' |
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6286 | 3' | -51.5 | NC_001844.1 | + | 76994 | 0.67 | 0.965174 |
Target: 5'- --uCGCUcGGCGUUGGGuGCUAGCauGCUGa -3' miRNA: 3'- auuGCGA-UUGCGAUCC-CGAUUG--CGAU- -5' |
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6286 | 3' | -51.5 | NC_001844.1 | + | 64988 | 0.66 | 0.975568 |
Target: 5'- aGACGCUAGCGCgucuacgggccuagaUuuuGGGCgugaUGACGCg- -3' miRNA: 3'- aUUGCGAUUGCG---------------Au--CCCG----AUUGCGau -5' |
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6286 | 3' | -51.5 | NC_001844.1 | + | 119384 | 0.66 | 0.981829 |
Target: 5'- --uCGCcauACGCUGGGGU--GCGUUAg -3' miRNA: 3'- auuGCGau-UGCGAUCCCGauUGCGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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