Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6286 | 5' | -49.4 | NC_001844.1 | + | 37328 | 0.76 | 0.732534 |
Target: 5'- gGCUAGCGCgucaccauGCGCUGGGGUgu-CGg -3' miRNA: 3'- -CGAUUGCGau------UGCGAUCCCGauuGCg -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 96631 | 0.76 | 0.752951 |
Target: 5'- cCUGugGCcaGGCGCUAGGggcuauaucuGCUAGCGCg -3' miRNA: 3'- cGAUugCGa-UUGCGAUCC----------CGAUUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 79956 | 0.76 | 0.762988 |
Target: 5'- gGgUGGCGCggguCGCUGGGGCUggUGg -3' miRNA: 3'- -CgAUUGCGauu-GCGAUCCCGAuuGCg -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 108799 | 0.73 | 0.89269 |
Target: 5'- cCUAGCGUUAGCGUUAGccCUAGCGUu -3' miRNA: 3'- cGAUUGCGAUUGCGAUCccGAUUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 108763 | 0.73 | 0.89269 |
Target: 5'- cCUAGCGUUAGCGUUAGccCUAGCGUu -3' miRNA: 3'- cGAUUGCGAUUGCGAUCccGAUUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 108727 | 0.73 | 0.89269 |
Target: 5'- cCUAGCGUUAGCGUUAGccCUAGCGUu -3' miRNA: 3'- cGAUUGCGAUUGCGAUCccGAUUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 108656 | 0.73 | 0.89269 |
Target: 5'- cCUAGCGUUAGCGUUAGccCUAGCGUu -3' miRNA: 3'- cGAUUGCGAUUGCGAUCccGAUUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 108620 | 0.73 | 0.89269 |
Target: 5'- cCUAGCGUUAGCGUUAGccCUAGCGUu -3' miRNA: 3'- cGAUUGCGAUUGCGAUCccGAUUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 108584 | 0.73 | 0.89269 |
Target: 5'- cCUAGCGUUAGCGUUAGccCUAGCGUu -3' miRNA: 3'- cGAUUGCGAUUGCGAUCccGAUUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 108548 | 0.73 | 0.89269 |
Target: 5'- cCUAGCGUUAGCGUUAGccCUAGCGUu -3' miRNA: 3'- cGAUUGCGAUUGCGAUCccGAUUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 108512 | 0.73 | 0.89269 |
Target: 5'- cCUAGCGUUAGCGUUAGccCUAGCGUu -3' miRNA: 3'- cGAUUGCGAUUGCGAUCccGAUUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 89324 | 0.73 | 0.899566 |
Target: 5'- cGCUGACGCUcuAAUGCgGGGGCaguUGUg -3' miRNA: 3'- -CGAUUGCGA--UUGCGaUCCCGauuGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 12919 | 0.71 | 0.935358 |
Target: 5'- uGCUGAUGCUGcguCGCUugcaugugcGGcGGCU-ACGCg -3' miRNA: 3'- -CGAUUGCGAUu--GCGA---------UC-CCGAuUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 125730 | 0.71 | 0.945186 |
Target: 5'- -aUGugGCUuACGCUcuaGGCUGGCGUa -3' miRNA: 3'- cgAUugCGAuUGCGAuc-CCGAUUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 25034 | 0.71 | 0.953979 |
Target: 5'- aGCcAACGUggacgGACGCaGGGGUUuauugGACGCa -3' miRNA: 3'- -CGaUUGCGa----UUGCGaUCCCGA-----UUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 108691 | 0.7 | 0.965295 |
Target: 5'- cCUAGCGUUAGCGUUAGcccagcGUUAGCGUu -3' miRNA: 3'- cGAUUGCGAUUGCGAUCc-----CGAUUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 38932 | 0.7 | 0.965295 |
Target: 5'- cGCUAauuucugcagcACGCUGucGCGCcgAGuuGGCUAACGUu -3' miRNA: 3'- -CGAU-----------UGCGAU--UGCGa-UC--CCGAUUGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 77310 | 0.7 | 0.965295 |
Target: 5'- uGCUGGCGgUAGCGCUccGGUccuccACGCu -3' miRNA: 3'- -CGAUUGCgAUUGCGAucCCGau---UGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 12689 | 0.69 | 0.973385 |
Target: 5'- aGCUGgucGCGCUGguacACGUUGGGGUgggguuacacccGCGCu -3' miRNA: 3'- -CGAU---UGCGAU----UGCGAUCCCGau----------UGCG- -5' |
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6286 | 5' | -49.4 | NC_001844.1 | + | 45510 | 0.69 | 0.979552 |
Target: 5'- aCUGcCGgaAACGCUuccGGcGGCUGAUGCu -3' miRNA: 3'- cGAUuGCgaUUGCGA---UC-CCGAUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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