miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6287 3' -59.1 NC_001844.1 + 142148 0.66 0.808121
Target:  5'- gGCCgCCAUGGCgucCCCGAUgUGGGGcAGg -3'
miRNA:   3'- -CGGgGGUGCCGaa-GGGCUG-GCCUU-UC- -5'
6287 3' -59.1 NC_001844.1 + 135984 0.66 0.790672
Target:  5'- uGCCCCCACaGGCgggUUCCGcgaCGGu--- -3'
miRNA:   3'- -CGGGGGUG-CCGa--AGGGCug-GCCuuuc -5'
6287 3' -59.1 NC_001844.1 + 115532 0.67 0.763504
Target:  5'- cGCCUCCGCGGCggagcgUCCGcuguccCCGGGc-- -3'
miRNA:   3'- -CGGGGGUGCCGaa----GGGCu-----GGCCUuuc -5'
6287 3' -59.1 NC_001844.1 + 114763 0.67 0.76258
Target:  5'- aGCCCCUggagccgGCGGCgggggagcUCCCGGggucCCGcGGAGGa -3'
miRNA:   3'- -CGGGGG-------UGCCGa-------AGGGCU----GGC-CUUUC- -5'
6287 3' -59.1 NC_001844.1 + 143240 0.67 0.755149
Target:  5'- cGCCCCCucccugcgaggagacCGGCaucUCCUGGCCGaGGAu- -3'
miRNA:   3'- -CGGGGGu--------------GCCGa--AGGGCUGGC-CUUuc -5'
6287 3' -59.1 NC_001844.1 + 142920 0.67 0.724811
Target:  5'- aGCaggCCCACGGCUUcccccaacaugccCCCGGCCaGAc-- -3'
miRNA:   3'- -CGg--GGGUGCCGAA-------------GGGCUGGcCUuuc -5'
6287 3' -59.1 NC_001844.1 + 142193 0.68 0.706414
Target:  5'- gGCCaCCGaGGCUgCCgCGugCGGAAGGg -3'
miRNA:   3'- -CGGgGGUgCCGAaGG-GCugGCCUUUC- -5'
6287 3' -59.1 NC_001844.1 + 110878 0.68 0.667049
Target:  5'- aGCCgCCACuGGUggCCCGGCCaGAcAAGa -3'
miRNA:   3'- -CGGgGGUG-CCGaaGGGCUGGcCU-UUC- -5'
6287 3' -59.1 NC_001844.1 + 120120 0.69 0.597415
Target:  5'- cGCCCCaCAUGGCUggCCGugUGGcauGGu -3'
miRNA:   3'- -CGGGG-GUGCCGAagGGCugGCCuu-UC- -5'
6287 3' -59.1 NC_001844.1 + 114911 0.7 0.586519
Target:  5'- cGCuCCCCAcCGGCUgccucccaggcuaUCCuCGGCCaGGAGAu -3'
miRNA:   3'- -CG-GGGGU-GCCGA-------------AGG-GCUGG-CCUUUc -5'
6287 3' -59.1 NC_001844.1 + 141465 0.7 0.538556
Target:  5'- aGCUCCCGgGGCgaggggCCCGcCCGGGu-- -3'
miRNA:   3'- -CGGGGGUgCCGaa----GGGCuGGCCUuuc -5'
6287 3' -59.1 NC_001844.1 + 113749 0.71 0.481806
Target:  5'- gGCCUaCACGGUggacaCCCgGGCCGGAGAGc -3'
miRNA:   3'- -CGGGgGUGCCGaa---GGG-CUGGCCUUUC- -5'
6287 3' -59.1 NC_001844.1 + 137834 0.73 0.377317
Target:  5'- uGCCCgCCA-GGCUUCCCGGcggcucugaccauCCGGAAu- -3'
miRNA:   3'- -CGGG-GGUgCCGAAGGGCU-------------GGCCUUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.