miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6288 3' -56.3 NC_001844.1 + 143153 0.66 0.887146
Target:  5'- gGCGAGCcuGGGucuGGGuGGcccGGGAGCAGGuuGu -3'
miRNA:   3'- -CGUUCG--CCU---UCC-CC---UCCUCGUCCuuC- -5'
6288 3' -56.3 NC_001844.1 + 145482 0.66 0.880148
Target:  5'- ---------nGGGGAGGAGCAGGAc- -3'
miRNA:   3'- cguucgccuuCCCCUCCUCGUCCUuc -5'
6288 3' -56.3 NC_001844.1 + 142616 0.66 0.872926
Target:  5'- gGCAGGCGGGAGaGGGAucucgcuugGGucaAGCccGGGGAc -3'
miRNA:   3'- -CGUUCGCCUUC-CCCU---------CC---UCG--UCCUUc -5'
6288 3' -56.3 NC_001844.1 + 114754 0.66 0.865486
Target:  5'- aGCcGGCGGcGGGGGAgcucccGGGGUcccgcGGAGGa -3'
miRNA:   3'- -CGuUCGCCuUCCCCU------CCUCGu----CCUUC- -5'
6288 3' -56.3 NC_001844.1 + 114802 0.67 0.849976
Target:  5'- aCGGGCGccccAGGGGcaaGAGCGGGAAGc -3'
miRNA:   3'- cGUUCGCcu--UCCCCuc-CUCGUCCUUC- -5'
6288 3' -56.3 NC_001844.1 + 138824 0.67 0.833668
Target:  5'- gGCGGGUauGGAuauGGGGGGGGGCAa---- -3'
miRNA:   3'- -CGUUCG--CCUu--CCCCUCCUCGUccuuc -5'
6288 3' -56.3 NC_001844.1 + 43772 0.67 0.833668
Target:  5'- aGC-AGCuGGGAGGGGAGGuGUuGGu-- -3'
miRNA:   3'- -CGuUCG-CCUUCCCCUCCuCGuCCuuc -5'
6288 3' -56.3 NC_001844.1 + 122307 0.68 0.780558
Target:  5'- -gAGGUGGGGagguGGGGAGGuggggaGGUGGGGAGg -3'
miRNA:   3'- cgUUCGCCUU----CCCCUCC------UCGUCCUUC- -5'
6288 3' -56.3 NC_001844.1 + 122267 0.68 0.780558
Target:  5'- -gAGGUGGGGagguGGGGAGGuggggaGGUGGGGAGg -3'
miRNA:   3'- cgUUCGCCUU----CCCCUCC------UCGUCCUUC- -5'
6288 3' -56.3 NC_001844.1 + 122227 0.68 0.780558
Target:  5'- -gAGGUGGGGagguGGGGAGGuggggaGGUGGGGAGg -3'
miRNA:   3'- cgUUCGCCUU----CCCCUCC------UCGUCCUUC- -5'
6288 3' -56.3 NC_001844.1 + 122349 0.68 0.761686
Target:  5'- cGgAGGUGGGGagguGGGGAGGuggggaGGUGGGGAGg -3'
miRNA:   3'- -CgUUCGCCUU----CCCCUCC------UCGUCCUUC- -5'
6288 3' -56.3 NC_001844.1 + 118968 0.69 0.712637
Target:  5'- ----uUGGAuGGGGuGGGGGCGGGAGGu -3'
miRNA:   3'- cguucGCCUuCCCC-UCCUCGUCCUUC- -5'
6288 3' -56.3 NC_001844.1 + 100666 0.69 0.702582
Target:  5'- gGCAgAGCGGAaagacccgccAGGGGGGuaauaugcccGuGCAGGAAGc -3'
miRNA:   3'- -CGU-UCGCCU----------UCCCCUC----------CuCGUCCUUC- -5'
6288 3' -56.3 NC_001844.1 + 122111 0.73 0.490334
Target:  5'- cGCcuGUGGggGcaGGGGGAGCGGGAGc -3'
miRNA:   3'- -CGuuCGCCuuCc-CCUCCUCGUCCUUc -5'
6288 3' -56.3 NC_001844.1 + 145507 1.12 0.001602
Target:  5'- cGCAAGCGGAAGGGGAGGAGCAGGAAGg -3'
miRNA:   3'- -CGUUCGCCUUCCCCUCCUCGUCCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.