miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6288 5' -56.7 NC_001844.1 + 114255 0.66 0.886069
Target:  5'- cGACCCGgcGGCUCGCgCCGggAGCCCc -3'
miRNA:   3'- -CUGGGUgaUUGGGCG-GGUgaUUGGGc -5'
6288 5' -56.7 NC_001844.1 + 136340 0.66 0.879091
Target:  5'- -cCCCAU--GCCCGUuuuCCACUcggcgGACCCGc -3'
miRNA:   3'- cuGGGUGauUGGGCG---GGUGA-----UUGGGC- -5'
6288 5' -56.7 NC_001844.1 + 142456 0.66 0.879091
Target:  5'- gGACCCGCgg--CCGCCguCUugcgccguGGCCCGa -3'
miRNA:   3'- -CUGGGUGauugGGCGGguGA--------UUGGGC- -5'
6288 5' -56.7 NC_001844.1 + 136257 0.66 0.866728
Target:  5'- aGACCCACgcugagcucagcACCCgccuccuuuuuugcGCCCACUGgugcuGCCUGg -3'
miRNA:   3'- -CUGGGUGau----------UGGG--------------CGGGUGAU-----UGGGC- -5'
6288 5' -56.7 NC_001844.1 + 110895 0.66 0.864482
Target:  5'- aGGCCagcaGCUGugCCaGCcgCCACUGgugGCCCGg -3'
miRNA:   3'- -CUGGg---UGAUugGG-CG--GGUGAU---UGGGC- -5'
6288 5' -56.7 NC_001844.1 + 141859 0.66 0.864482
Target:  5'- -uCCCAg-AGCCCGuCCCGCgagucCCCGg -3'
miRNA:   3'- cuGGGUgaUUGGGC-GGGUGauu--GGGC- -5'
6288 5' -56.7 NC_001844.1 + 121628 0.67 0.815869
Target:  5'- cGCaCCGCUGACgcgaauUCGCCCACUGAgCgGg -3'
miRNA:   3'- cUG-GGUGAUUG------GGCGGGUGAUUgGgC- -5'
6288 5' -56.7 NC_001844.1 + 115486 0.67 0.815869
Target:  5'- aGAUCCcCUcuCCCGCCUGCccuCCCGa -3'
miRNA:   3'- -CUGGGuGAuuGGGCGGGUGauuGGGC- -5'
6288 5' -56.7 NC_001844.1 + 137234 0.68 0.770737
Target:  5'- -cCCCACcAACCCuCCCACcacacguGCCCGc -3'
miRNA:   3'- cuGGGUGaUUGGGcGGGUGau-----UGGGC- -5'
6288 5' -56.7 NC_001844.1 + 136670 0.68 0.761307
Target:  5'- uACCC-CUGguACCCGgCCGC--GCCCGg -3'
miRNA:   3'- cUGGGuGAU--UGGGCgGGUGauUGGGC- -5'
6288 5' -56.7 NC_001844.1 + 60901 0.7 0.672403
Target:  5'- cGCCUGCgcaaaguugUGACCCGCauugucaaaCACUGGCCCGu -3'
miRNA:   3'- cUGGGUG---------AUUGGGCGg--------GUGAUUGGGC- -5'
6288 5' -56.7 NC_001844.1 + 14753 0.72 0.530792
Target:  5'- cACCCGCaGACCaCGCCCACcu-CCCc -3'
miRNA:   3'- cUGGGUGaUUGG-GCGGGUGauuGGGc -5'
6288 5' -56.7 NC_001844.1 + 115073 0.74 0.418641
Target:  5'- -uCCCGCaucCCCGCCUugUGGCCCa -3'
miRNA:   3'- cuGGGUGauuGGGCGGGugAUUGGGc -5'
6288 5' -56.7 NC_001844.1 + 20240 0.79 0.231729
Target:  5'- uGugCUACgccGCCCGCCCACUcAGCCCa -3'
miRNA:   3'- -CugGGUGau-UGGGCGGGUGA-UUGGGc -5'
6288 5' -56.7 NC_001844.1 + 141328 0.8 0.205037
Target:  5'- -cCCCGCUAAUCUGCCCAgggGACCCGg -3'
miRNA:   3'- cuGGGUGAUUGGGCGGGUga-UUGGGC- -5'
6288 5' -56.7 NC_001844.1 + 145157 0.91 0.039157
Target:  5'- nGCCCACUAACCCGCCCACUAACacaaaccacaCCGg -3'
miRNA:   3'- cUGGGUGAUUGGGCGGGUGAUUG----------GGC- -5'
6288 5' -56.7 NC_001844.1 + 145289 1.04 0.004836
Target:  5'- cGCCCACUAACCCGCCCACUAACCCGc -3'
miRNA:   3'- cUGGGUGAUUGGGCGGGUGAUUGGGC- -5'
6288 5' -56.7 NC_001844.1 + 145253 1.04 0.004836
Target:  5'- cGCCCACUAACCCGCCCACUAACCCGc -3'
miRNA:   3'- cUGGGUGAUUGGGCGGGUGAUUGGGC- -5'
6288 5' -56.7 NC_001844.1 + 145217 1.04 0.004836
Target:  5'- cGCCCACUAACCCGCCCACUAACCCGc -3'
miRNA:   3'- cUGGGUGAUUGGGCGGGUGAUUGGGC- -5'
6288 5' -56.7 NC_001844.1 + 145361 1.04 0.004836
Target:  5'- cGCCCACUAACCCGCCCACUAACCCGc -3'
miRNA:   3'- cUGGGUGAUUGGGCGGGUGAUUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.