miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6289 5' -55.3 NC_001844.1 + 44811 0.66 0.916943
Target:  5'- -----gGGUUUGGaCGGGCCGGggcCGCu -3'
miRNA:   3'- cuuuugCCGGACC-GUCCGGUCau-GCG- -5'
6289 5' -55.3 NC_001844.1 + 112942 0.66 0.916943
Target:  5'- -uGGGCGGgUuagugGGCGGGUUAGUGgGCg -3'
miRNA:   3'- cuUUUGCCgGa----CCGUCCGGUCAUgCG- -5'
6289 5' -55.3 NC_001844.1 + 112906 0.66 0.916943
Target:  5'- -uGGGCGGgUuagugGGCGGGUUAGUGgGCg -3'
miRNA:   3'- cuUUUGCCgGa----CCGUCCGGUCAUgCG- -5'
6289 5' -55.3 NC_001844.1 + 112870 0.66 0.916943
Target:  5'- -uGGGCGGgUuagugGGCGGGUUAGUGgGCg -3'
miRNA:   3'- cuUUUGCCgGa----CCGUCCGGUCAUgCG- -5'
6289 5' -55.3 NC_001844.1 + 112834 0.66 0.916943
Target:  5'- -uGGGCGGgUuagugGGCGGGUUAGUGgGCg -3'
miRNA:   3'- cuUUUGCCgGa----CCGUCCGGUCAUgCG- -5'
6289 5' -55.3 NC_001844.1 + 112798 0.66 0.916943
Target:  5'- -uGGGCGGgUuagugGGCGGGUUAGUGgGCg -3'
miRNA:   3'- cuUUUGCCgGa----CCGUCCGGUCAUgCG- -5'
6289 5' -55.3 NC_001844.1 + 112762 0.66 0.916943
Target:  5'- -uGGGCGGgUuagugGGCGGGUUAGUGgGCg -3'
miRNA:   3'- cuUUUGCCgGa----CCGUCCGGUCAUgCG- -5'
6289 5' -55.3 NC_001844.1 + 112726 0.66 0.916943
Target:  5'- -uGGGCGGgUuagugGGCGGGUUAGUGgGCg -3'
miRNA:   3'- cuUUUGCCgGa----CCGUCCGGUCAUgCG- -5'
6289 5' -55.3 NC_001844.1 + 143717 0.66 0.898333
Target:  5'- cGGAGCGGUccgCUGGCAG-CCAGcucuccaaaGCGCg -3'
miRNA:   3'- cUUUUGCCG---GACCGUCcGGUCa--------UGCG- -5'
6289 5' -55.3 NC_001844.1 + 142355 0.67 0.88473
Target:  5'- aGAGGCaGCCUGuGCuuGGGCCGGguaGCu -3'
miRNA:   3'- cUUUUGcCGGAC-CG--UCCGGUCaugCG- -5'
6289 5' -55.3 NC_001844.1 + 117462 0.67 0.870206
Target:  5'- aGAGAGCGaGCCaUGGCcaGCCA--GCGCa -3'
miRNA:   3'- -CUUUUGC-CGG-ACCGucCGGUcaUGCG- -5'
6289 5' -55.3 NC_001844.1 + 120265 0.67 0.870206
Target:  5'- cGGGAA--GCCUGGCGGGCac--GCGCa -3'
miRNA:   3'- -CUUUUgcCGGACCGUCCGgucaUGCG- -5'
6289 5' -55.3 NC_001844.1 + 74470 0.67 0.870206
Target:  5'- gGGAAGCGGCUUGccGguGGCCAuaGUucucaACGUg -3'
miRNA:   3'- -CUUUUGCCGGAC--CguCCGGU--CA-----UGCG- -5'
6289 5' -55.3 NC_001844.1 + 144217 0.68 0.837733
Target:  5'- ---cGCGGCUgaggUGGCgcucccgGGGCCAGcgaacgGCGCa -3'
miRNA:   3'- cuuuUGCCGG----ACCG-------UCCGGUCa-----UGCG- -5'
6289 5' -55.3 NC_001844.1 + 140844 0.68 0.818942
Target:  5'- gGAAGGCGgcgggaugacuaccGCCgGGguGGCCAaggGCGCg -3'
miRNA:   3'- -CUUUUGC--------------CGGaCCguCCGGUca-UGCG- -5'
6289 5' -55.3 NC_001844.1 + 101252 0.68 0.812781
Target:  5'- -cGAGCGaGaCCUGGCAGGUaaacuGUAUGUg -3'
miRNA:   3'- cuUUUGC-C-GGACCGUCCGgu---CAUGCG- -5'
6289 5' -55.3 NC_001844.1 + 112678 0.69 0.785477
Target:  5'- -uGGGCGGgUuagUGGCGGGUUAGUGgGCg -3'
miRNA:   3'- cuUUUGCCgG---ACCGUCCGGUCAUgCG- -5'
6289 5' -55.3 NC_001844.1 + 140416 0.69 0.766549
Target:  5'- ----uCGGCCgGGCagacgcAGGCCgAGUAUGCc -3'
miRNA:   3'- cuuuuGCCGGaCCG------UCCGG-UCAUGCG- -5'
6289 5' -55.3 NC_001844.1 + 122636 0.7 0.731289
Target:  5'- aGAGGGuCGGCCggcGGCAGGCgCGGcgacacaggcggcgACGCg -3'
miRNA:   3'- -CUUUU-GCCGGa--CCGUCCG-GUCa-------------UGCG- -5'
6289 5' -55.3 NC_001844.1 + 121913 0.71 0.645318
Target:  5'- ---cAUGGCCUGGCGGGaaCAGccgaACGCg -3'
miRNA:   3'- cuuuUGCCGGACCGUCCg-GUCa---UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.