Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
629 | 5' | -51.4 | AC_000017.1 | + | 6865 | 0.66 | 0.803092 |
Target: 5'- aGGuuGCUacgggCGGGCUGCUCUGcucggaAGACGAu -3' miRNA: 3'- aUCuuUGA-----GCCUGGUGAGAC------UCUGCU- -5' |
|||||||
629 | 5' | -51.4 | AC_000017.1 | + | 8622 | 0.66 | 0.792809 |
Target: 5'- gGGggGCUCGGGacCCGCcggGAGAgGGg -3' miRNA: 3'- aUCuuUGAGCCU--GGUGagaCUCUgCU- -5' |
|||||||
629 | 5' | -51.4 | AC_000017.1 | + | 10259 | 0.69 | 0.600018 |
Target: 5'- gAG-AGCUCGGugUA-UCUGAGACGc -3' miRNA: 3'- aUCuUUGAGCCugGUgAGACUCUGCu -5' |
|||||||
629 | 5' | -51.4 | AC_000017.1 | + | 5823 | 1.08 | 0.001575 |
Target: 5'- aUAGAAACUCGGACCACUCUGAGACGAa -3' miRNA: 3'- -AUCUUUGAGCCUGGUGAGACUCUGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home